miRNA display CGI


Results 81 - 100 of 419 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23742 5' -59.8 NC_005261.1 + 33261 0.67 0.685261
Target:  5'- gCCGGCCGUcg--CGGCccccGUCCcCGUCCc -3'
miRNA:   3'- -GGUCGGCGucgaGCCG----CAGGuGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 44008 0.67 0.695044
Target:  5'- cCCAGCC-CGGCuUCGGCG-CgGCGg-- -3'
miRNA:   3'- -GGUCGGcGUCG-AGCCGCaGgUGCagg -5'
23742 5' -59.8 NC_005261.1 + 134726 0.67 0.685261
Target:  5'- cCCGGCCGggaccCGGaCUCGGCGacggcacCCGCGaCCc -3'
miRNA:   3'- -GGUCGGC-----GUC-GAGCCGCa------GGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 22823 0.67 0.685261
Target:  5'- gCCGccGCCGCcguuggcgccgGGCUCGGggaagaacacguCGUCCucgcCGUCCg -3'
miRNA:   3'- -GGU--CGGCG-----------UCGAGCC------------GCAGGu---GCAGG- -5'
23742 5' -59.8 NC_005261.1 + 102390 0.67 0.695044
Target:  5'- gCGGCgCGCAGCUCcucGCG-CCAgCGcUCCu -3'
miRNA:   3'- gGUCG-GCGUCGAGc--CGCaGGU-GC-AGG- -5'
23742 5' -59.8 NC_005261.1 + 46504 0.67 0.704779
Target:  5'- -gGGgCGCAGCcCGGCGUcgcgcagcaCCGCcUCCg -3'
miRNA:   3'- ggUCgGCGUCGaGCCGCA---------GGUGcAGG- -5'
23742 5' -59.8 NC_005261.1 + 100130 0.67 0.714455
Target:  5'- aCCGGCCGCAgcccccGCUCGGCcagCgagaagcacagCGCGcCCa -3'
miRNA:   3'- -GGUCGGCGU------CGAGCCGca-G-----------GUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 118948 0.67 0.714455
Target:  5'- gCUGGCCGCGGCgcacgUGGCcaagGUCCugcACG-CCg -3'
miRNA:   3'- -GGUCGGCGUCGa----GCCG----CAGG---UGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 3005 0.67 0.704779
Target:  5'- cCCGgcGCCGgGGCUCccgcgGGCcUCCcCGUCCc -3'
miRNA:   3'- -GGU--CGGCgUCGAG-----CCGcAGGuGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 12422 0.67 0.695044
Target:  5'- uCCAGggGCGGCggagggcuugCGGCGUcggCCGCGUCg -3'
miRNA:   3'- -GGUCggCGUCGa---------GCCGCA---GGUGCAGg -5'
23742 5' -59.8 NC_005261.1 + 19342 0.67 0.695044
Target:  5'- aCguGCCaGCAGCUCGGgGgaguucgucUCCAgGgugCCa -3'
miRNA:   3'- -GguCGG-CGUCGAGCCgC---------AGGUgCa--GG- -5'
23742 5' -59.8 NC_005261.1 + 96886 0.67 0.685261
Target:  5'- gCGGauCCGCGcCUCGGCGUCCGCc--- -3'
miRNA:   3'- gGUC--GGCGUcGAGCCGCAGGUGcagg -5'
23742 5' -59.8 NC_005261.1 + 130432 0.67 0.695044
Target:  5'- cCCGGCCGCGGCgccuacgUGGUcUCCuACGaCUg -3'
miRNA:   3'- -GGUCGGCGUCGa------GCCGcAGG-UGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 116513 0.67 0.71349
Target:  5'- --cGCCGCcGCggCGGCGcgaggcccgccgcUCCGCGcCCg -3'
miRNA:   3'- gguCGGCGuCGa-GCCGC-------------AGGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 98130 0.67 0.685261
Target:  5'- --cGCCGCGGCaccggCGGCcGUCgGCGgcaaggCCg -3'
miRNA:   3'- gguCGGCGUCGa----GCCG-CAGgUGCa-----GG- -5'
23742 5' -59.8 NC_005261.1 + 32593 0.67 0.695044
Target:  5'- uCCu-CCGCGuccucCUCGuCGUCCGCGUCCu -3'
miRNA:   3'- -GGucGGCGUc----GAGCcGCAGGUGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 46677 0.67 0.704779
Target:  5'- -uGGCCGCGcGCUccaCGGCGgccgCCACGg-- -3'
miRNA:   3'- ggUCGGCGU-CGA---GCCGCa---GGUGCagg -5'
23742 5' -59.8 NC_005261.1 + 93912 0.67 0.685261
Target:  5'- gCGGgCGCGGCgcccgCGGgcuugcgcCGUCCGCGggcgCCg -3'
miRNA:   3'- gGUCgGCGUCGa----GCC--------GCAGGUGCa---GG- -5'
23742 5' -59.8 NC_005261.1 + 30332 0.67 0.685261
Target:  5'- gCCGG-CGCGGCU-GGCGgCCGCGcUCg -3'
miRNA:   3'- -GGUCgGCGUCGAgCCGCaGGUGC-AGg -5'
23742 5' -59.8 NC_005261.1 + 22742 0.67 0.685261
Target:  5'- gUCGGgCGCGGggCGGCGgcggCCcacGCGUCUg -3'
miRNA:   3'- -GGUCgGCGUCgaGCCGCa---GG---UGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.