miRNA display CGI


Results 1 - 20 of 419 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23742 5' -59.8 NC_005261.1 + 108738 0.87 0.046932
Target:  5'- gCCAGCgGCGGCgccgCGGCGUCCGCGgcgcgCCg -3'
miRNA:   3'- -GGUCGgCGUCGa---GCCGCAGGUGCa----GG- -5'
23742 5' -59.8 NC_005261.1 + 104542 0.86 0.052132
Target:  5'- aCCAGgCGCAGCUUGGCGUCCGCcagGUCg -3'
miRNA:   3'- -GGUCgGCGUCGAGCCGCAGGUG---CAGg -5'
23742 5' -59.8 NC_005261.1 + 123008 0.84 0.07708
Target:  5'- aCGGCCGCGGCcgUGGCGUCCGCGagCg -3'
miRNA:   3'- gGUCGGCGUCGa-GCCGCAGGUGCagG- -5'
23742 5' -59.8 NC_005261.1 + 58491 0.83 0.085468
Target:  5'- gCCGGCgCGCGGCcgcuuUUGGCGcCCGCGUCCa -3'
miRNA:   3'- -GGUCG-GCGUCG-----AGCCGCaGGUGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 12063 0.81 0.113233
Target:  5'- aCCGGCggUGCGGCagCGGCGUCCGCG-CCg -3'
miRNA:   3'- -GGUCG--GCGUCGa-GCCGCAGGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 65666 0.8 0.138506
Target:  5'- gCCGGCgCGCAGCgccgccagcacCGG-GUCCACGUCCa -3'
miRNA:   3'- -GGUCG-GCGUCGa----------GCCgCAGGUGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 58954 0.8 0.128472
Target:  5'- cUCGGCCaGCAGCgccUCGGCGcCCGCGUCg -3'
miRNA:   3'- -GGUCGG-CGUCG---AGCCGCaGGUGCAGg -5'
23742 5' -59.8 NC_005261.1 + 125305 0.79 0.168447
Target:  5'- gCCGGacccgcgggcgcuCCGCGGcCUCGGCGUCCgcagcgcgcaggGCGUCCa -3'
miRNA:   3'- -GGUC-------------GGCGUC-GAGCCGCAGG------------UGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 32543 0.79 0.166391
Target:  5'- cCCGGCCGCGGCgcgggcCGGCGcgcguggaagugcucUCCuCGUCCg -3'
miRNA:   3'- -GGUCGGCGUCGa-----GCCGC---------------AGGuGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 11921 0.79 0.160755
Target:  5'- cCCGGCCgGCGGCUgCGGCGgcCCGCG-CCg -3'
miRNA:   3'- -GGUCGG-CGUCGA-GCCGCa-GGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 109334 0.79 0.156835
Target:  5'- gCGGCCGCgGGgUCGGCGgCCGCGUCg -3'
miRNA:   3'- gGUCGGCG-UCgAGCCGCaGGUGCAGg -5'
23742 5' -59.8 NC_005261.1 + 68128 0.79 0.156835
Target:  5'- gCgGGCCGCGGCgCGGCGaCCGCG-CCg -3'
miRNA:   3'- -GgUCGGCGUCGaGCCGCaGGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 122359 0.79 0.153002
Target:  5'- gCGGCCGCGGCUCGcGCGgccccaCCGCGgCCu -3'
miRNA:   3'- gGUCGGCGUCGAGC-CGCa-----GGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 106529 0.78 0.195408
Target:  5'- gCCAGCacCGCcucCUCGGCGgcggCCGCGUCCg -3'
miRNA:   3'- -GGUCG--GCGuc-GAGCCGCa---GGUGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 105720 0.78 0.190743
Target:  5'- gUCuGCCGCGGCUgccacaCGGCGUCCACGa-- -3'
miRNA:   3'- -GGuCGGCGUCGA------GCCGCAGGUGCagg -5'
23742 5' -59.8 NC_005261.1 + 126248 0.78 0.186176
Target:  5'- gCC-GCCGCAGCUCcgccGCGUCCAagaagcCGUCCu -3'
miRNA:   3'- -GGuCGGCGUCGAGc---CGCAGGU------GCAGG- -5'
23742 5' -59.8 NC_005261.1 + 103509 0.78 0.181706
Target:  5'- --cGCCGCGGacggCGGCGUCCGCGgcaUCCg -3'
miRNA:   3'- gguCGGCGUCga--GCCGCAGGUGC---AGG- -5'
23742 5' -59.8 NC_005261.1 + 49248 0.78 0.173049
Target:  5'- gCCGccGCCGCGGCggcgUCGGCG-CgCACGUCCg -3'
miRNA:   3'- -GGU--CGGCGUCG----AGCCGCaG-GUGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 138064 0.77 0.205037
Target:  5'- gCGGCgGCGGCggCGGCagcgGUCCugGUCCc -3'
miRNA:   3'- gGUCGgCGUCGa-GCCG----CAGGugCAGG- -5'
23742 5' -59.8 NC_005261.1 + 81272 0.77 0.209503
Target:  5'- cCCGGCCGCcugcgcgagccggAGCgCGGCG-CgCACGUCCg -3'
miRNA:   3'- -GGUCGGCG-------------UCGaGCCGCaG-GUGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.