Results 41 - 60 of 419 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23742 | 5' | -59.8 | NC_005261.1 | + | 32382 | 0.75 | 0.271722 |
Target: 5'- gCAGgCGCGGCgcggCGGCGUCCcggagcGCGUgCCg -3' miRNA: 3'- gGUCgGCGUCGa---GCCGCAGG------UGCA-GG- -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 108445 | 0.75 | 0.265556 |
Target: 5'- cCCGGCCgaGCAGCgcgucgUCGGCGaggaucUCCGCGUCg -3' miRNA: 3'- -GGUCGG--CGUCG------AGCCGC------AGGUGCAGg -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 136491 | 0.75 | 0.265556 |
Target: 5'- gCAGCgaGCAGCUCGGCGcCgACG-CCu -3' miRNA: 3'- gGUCGg-CGUCGAGCCGCaGgUGCaGG- -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 102632 | 0.75 | 0.265556 |
Target: 5'- cUCGGCCGCGGCUU--CGUCCGCGgCCc -3' miRNA: 3'- -GGUCGGCGUCGAGccGCAGGUGCaGG- -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 74346 | 0.74 | 0.332427 |
Target: 5'- gCAGgCGCGGCggcggaaggGGCGgCCGCGUCCg -3' miRNA: 3'- gGUCgGCGUCGag-------CCGCaGGUGCAGG- -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 104142 | 0.74 | 0.332427 |
Target: 5'- cUCGGCCGcCAGgUCGGCcaccgcgccGUCCGCGggcgCCg -3' miRNA: 3'- -GGUCGGC-GUCgAGCCG---------CAGGUGCa---GG- -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 115296 | 0.74 | 0.332427 |
Target: 5'- gCAGCCGCAacGCgUCGGCG--CACGUCUg -3' miRNA: 3'- gGUCGGCGU--CG-AGCCGCagGUGCAGG- -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 75077 | 0.74 | 0.339756 |
Target: 5'- gCCGGCgGgGGCUCGGCGggCAuCGUCUu -3' miRNA: 3'- -GGUCGgCgUCGAGCCGCagGU-GCAGG- -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 4848 | 0.74 | 0.339756 |
Target: 5'- uCCGcGCCGCAGCcucaagggCGGCGgCCACGacggCCg -3' miRNA: 3'- -GGU-CGGCGUCGa-------GCCGCaGGUGCa---GG- -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 136923 | 0.74 | 0.325215 |
Target: 5'- gCGGCCGCGGCgcaugUGGUGguacaugggCCGCGUCg -3' miRNA: 3'- gGUCGGCGUCGa----GCCGCa--------GGUGCAGg -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 108660 | 0.74 | 0.31812 |
Target: 5'- gCCAGCCcCGGCgUC-GCGUCCucguCGUCCg -3' miRNA: 3'- -GGUCGGcGUCG-AGcCGCAGGu---GCAGG- -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 88960 | 0.74 | 0.31812 |
Target: 5'- gCCAGCgCGCGGCUCGGgGgCUACcUCUg -3' miRNA: 3'- -GGUCG-GCGUCGAGCCgCaGGUGcAGG- -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 48808 | 0.74 | 0.304282 |
Target: 5'- -aGGCCGU-GCgCGGCGUCCGCGacgCCg -3' miRNA: 3'- ggUCGGCGuCGaGCCGCAGGUGCa--GG- -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 70637 | 0.74 | 0.304282 |
Target: 5'- gCCAagcGCCGCGGCgcugagguUCGGCG-CCGCGgCCg -3' miRNA: 3'- -GGU---CGGCGUCG--------AGCCGCaGGUGCaGG- -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 4888 | 0.74 | 0.308384 |
Target: 5'- cUCAGCCGCGGCcgccucggcuUCGGCGgcggcugccuccgCCGCGgCCg -3' miRNA: 3'- -GGUCGGCGUCG----------AGCCGCa------------GGUGCaGG- -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 102066 | 0.74 | 0.311143 |
Target: 5'- aUCAGCCGCgucAGCU-GGC--CCACGUCCg -3' miRNA: 3'- -GGUCGGCG---UCGAgCCGcaGGUGCAGG- -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 121639 | 0.74 | 0.311143 |
Target: 5'- gCGGCCGCcGC-CGGCGagcgcgggcugUCCGCGUCg -3' miRNA: 3'- gGUCGGCGuCGaGCCGC-----------AGGUGCAGg -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 15367 | 0.73 | 0.347201 |
Target: 5'- cCCGGCgGC-GCUCGGCGcCCuCGgcgCCg -3' miRNA: 3'- -GGUCGgCGuCGAGCCGCaGGuGCa--GG- -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 29404 | 0.73 | 0.347201 |
Target: 5'- gCGGCCGCGcGCUacgCGGCGgCCGCGgggCCc -3' miRNA: 3'- gGUCGGCGU-CGA---GCCGCaGGUGCa--GG- -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 97114 | 0.73 | 0.347201 |
Target: 5'- cCgGGCCGCGGCcggaGGCG-CCGCGgCCa -3' miRNA: 3'- -GgUCGGCGUCGag--CCGCaGGUGCaGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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