miRNA display CGI


Results 21 - 40 of 419 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23742 5' -59.8 NC_005261.1 + 81272 0.77 0.209503
Target:  5'- cCCGGCCGCcugcgcgagccggAGCgCGGCG-CgCACGUCCg -3'
miRNA:   3'- -GGUCGGCG-------------UCGaGCCGCaG-GUGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 3882 0.77 0.210005
Target:  5'- aCGGCgCGCAGCUCGGCGagCGCGg-- -3'
miRNA:   3'- gGUCG-GCGUCGAGCCGCagGUGCagg -5'
23742 5' -59.8 NC_005261.1 + 1406 0.77 0.215075
Target:  5'- gCGGCCGCGGCggcggcgggggCGGCGcCCGCcUCCa -3'
miRNA:   3'- gGUCGGCGUCGa----------GCCGCaGGUGcAGG- -5'
23742 5' -59.8 NC_005261.1 + 47626 0.77 0.215075
Target:  5'- gCGGCCGCGGCcgcCGcGCGcaCCGCGUCCu -3'
miRNA:   3'- gGUCGGCGUCGa--GC-CGCa-GGUGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 71063 0.76 0.236416
Target:  5'- gCCAGCCGCcgcgcggcgGGCggGGCGUCCGgGcCCg -3'
miRNA:   3'- -GGUCGGCG---------UCGagCCGCAGGUgCaGG- -5'
23742 5' -59.8 NC_005261.1 + 75209 0.76 0.236416
Target:  5'- gCGGCCGCGGUggCGGCG-CUGCaGUCCa -3'
miRNA:   3'- gGUCGGCGUCGa-GCCGCaGGUG-CAGG- -5'
23742 5' -59.8 NC_005261.1 + 105138 0.76 0.247161
Target:  5'- gCCGGCgcgcgcagguccuCGCGGCUcgagggCGGCGUCCACGgggCCc -3'
miRNA:   3'- -GGUCG-------------GCGUCGA------GCCGCAGGUGCa--GG- -5'
23742 5' -59.8 NC_005261.1 + 64403 0.76 0.247737
Target:  5'- gCAGCaccaGCAGCgcgUCGGCGUCCACcG-CCa -3'
miRNA:   3'- gGUCGg---CGUCG---AGCCGCAGGUG-CaGG- -5'
23742 5' -59.8 NC_005261.1 + 46479 0.76 0.247737
Target:  5'- gCAGgUGCAGCUCGGCGcccUCCGCGg-- -3'
miRNA:   3'- gGUCgGCGUCGAGCCGC---AGGUGCagg -5'
23742 5' -59.8 NC_005261.1 + 107113 0.76 0.247737
Target:  5'- cCCAGCCGCgccaccgcgccGGCgaCGGCGcCCACGgCCg -3'
miRNA:   3'- -GGUCGGCG-----------UCGa-GCCGCaGGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 47665 0.76 0.25122
Target:  5'- gCCAGCCGCAGCgccgagcgcagcaCGGcCGcCCGCGgcgCCg -3'
miRNA:   3'- -GGUCGGCGUCGa------------GCC-GCaGGUGCa--GG- -5'
23742 5' -59.8 NC_005261.1 + 126067 0.76 0.253564
Target:  5'- gCCAGCCGCccgccGGcCUCGGCGggCGCGcCCa -3'
miRNA:   3'- -GGUCGGCG-----UC-GAGCCGCagGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 59947 0.76 0.253564
Target:  5'- uCCAGCCGCAGCgCGGCG--CGCGUg- -3'
miRNA:   3'- -GGUCGGCGUCGaGCCGCagGUGCAgg -5'
23742 5' -59.8 NC_005261.1 + 102632 0.75 0.265556
Target:  5'- cUCGGCCGCGGCUU--CGUCCGCGgCCc -3'
miRNA:   3'- -GGUCGGCGUCGAGccGCAGGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 136491 0.75 0.265556
Target:  5'- gCAGCgaGCAGCUCGGCGcCgACG-CCu -3'
miRNA:   3'- gGUCGg-CGUCGAGCCGCaGgUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 108445 0.75 0.265556
Target:  5'- cCCGGCCgaGCAGCgcgucgUCGGCGaggaucUCCGCGUCg -3'
miRNA:   3'- -GGUCGG--CGUCG------AGCCGC------AGGUGCAGg -5'
23742 5' -59.8 NC_005261.1 + 32382 0.75 0.271722
Target:  5'- gCAGgCGCGGCgcggCGGCGUCCcggagcGCGUgCCg -3'
miRNA:   3'- gGUCgGCGUCGa---GCCGCAGG------UGCA-GG- -5'
23742 5' -59.8 NC_005261.1 + 62996 0.75 0.271722
Target:  5'- uCCAGCCGgccCUCGGCGgCCGCGcCCg -3'
miRNA:   3'- -GGUCGGCgucGAGCCGCaGGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 109790 0.75 0.271722
Target:  5'- cCCGGCCGCuGCUgcgacggcCGGCG-CCGCuUCCg -3'
miRNA:   3'- -GGUCGGCGuCGA--------GCCGCaGGUGcAGG- -5'
23742 5' -59.8 NC_005261.1 + 4663 0.75 0.278002
Target:  5'- gUCGGCCGCGGCggCGGCGgcccCCGUGUCa -3'
miRNA:   3'- -GGUCGGCGUCGa-GCCGCa---GGUGCAGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.