miRNA display CGI


Results 41 - 60 of 419 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23742 5' -59.8 NC_005261.1 + 83349 0.75 0.284398
Target:  5'- aCCguGGcCCGCAGgaaGGCGUCCACGUCg -3'
miRNA:   3'- -GG--UC-GGCGUCgagCCGCAGGUGCAGg -5'
23742 5' -59.8 NC_005261.1 + 84297 0.75 0.284398
Target:  5'- cCCGGCCccgGCGGCgccgaaGGCGUaggUCGCGUCCg -3'
miRNA:   3'- -GGUCGG---CGUCGag----CCGCA---GGUGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 102793 0.75 0.284398
Target:  5'- cCCGGCCGCgAGCgCGGCGcccagccgCCGCGcgCCg -3'
miRNA:   3'- -GGUCGGCG-UCGaGCCGCa-------GGUGCa-GG- -5'
23742 5' -59.8 NC_005261.1 + 52405 0.75 0.289598
Target:  5'- -aGGUCGUcgaGGCUaaaguccucgaaGGCGUCCGCGUCCa -3'
miRNA:   3'- ggUCGGCG---UCGAg-----------CCGCAGGUGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 48808 0.74 0.304282
Target:  5'- -aGGCCGU-GCgCGGCGUCCGCGacgCCg -3'
miRNA:   3'- ggUCGGCGuCGaGCCGCAGGUGCa--GG- -5'
23742 5' -59.8 NC_005261.1 + 70637 0.74 0.304282
Target:  5'- gCCAagcGCCGCGGCgcugagguUCGGCG-CCGCGgCCg -3'
miRNA:   3'- -GGU---CGGCGUCG--------AGCCGCaGGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 4888 0.74 0.308384
Target:  5'- cUCAGCCGCGGCcgccucggcuUCGGCGgcggcugccuccgCCGCGgCCg -3'
miRNA:   3'- -GGUCGGCGUCG----------AGCCGCa------------GGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 102066 0.74 0.311143
Target:  5'- aUCAGCCGCgucAGCU-GGC--CCACGUCCg -3'
miRNA:   3'- -GGUCGGCG---UCGAgCCGcaGGUGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 121639 0.74 0.311143
Target:  5'- gCGGCCGCcGC-CGGCGagcgcgggcugUCCGCGUCg -3'
miRNA:   3'- gGUCGGCGuCGaGCCGC-----------AGGUGCAGg -5'
23742 5' -59.8 NC_005261.1 + 88960 0.74 0.31812
Target:  5'- gCCAGCgCGCGGCUCGGgGgCUACcUCUg -3'
miRNA:   3'- -GGUCG-GCGUCGAGCCgCaGGUGcAGG- -5'
23742 5' -59.8 NC_005261.1 + 108660 0.74 0.31812
Target:  5'- gCCAGCCcCGGCgUC-GCGUCCucguCGUCCg -3'
miRNA:   3'- -GGUCGGcGUCG-AGcCGCAGGu---GCAGG- -5'
23742 5' -59.8 NC_005261.1 + 136923 0.74 0.325215
Target:  5'- gCGGCCGCGGCgcaugUGGUGguacaugggCCGCGUCg -3'
miRNA:   3'- gGUCGGCGUCGa----GCCGCa--------GGUGCAGg -5'
23742 5' -59.8 NC_005261.1 + 115296 0.74 0.332427
Target:  5'- gCAGCCGCAacGCgUCGGCG--CACGUCUg -3'
miRNA:   3'- gGUCGGCGU--CG-AGCCGCagGUGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 104142 0.74 0.332427
Target:  5'- cUCGGCCGcCAGgUCGGCcaccgcgccGUCCGCGggcgCCg -3'
miRNA:   3'- -GGUCGGC-GUCgAGCCG---------CAGGUGCa---GG- -5'
23742 5' -59.8 NC_005261.1 + 74346 0.74 0.332427
Target:  5'- gCAGgCGCGGCggcggaaggGGCGgCCGCGUCCg -3'
miRNA:   3'- gGUCgGCGUCGag-------CCGCaGGUGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 75077 0.74 0.339756
Target:  5'- gCCGGCgGgGGCUCGGCGggCAuCGUCUu -3'
miRNA:   3'- -GGUCGgCgUCGAGCCGCagGU-GCAGG- -5'
23742 5' -59.8 NC_005261.1 + 4848 0.74 0.339756
Target:  5'- uCCGcGCCGCAGCcucaagggCGGCGgCCACGacggCCg -3'
miRNA:   3'- -GGU-CGGCGUCGa-------GCCGCaGGUGCa---GG- -5'
23742 5' -59.8 NC_005261.1 + 15367 0.73 0.347201
Target:  5'- cCCGGCgGC-GCUCGGCGcCCuCGgcgCCg -3'
miRNA:   3'- -GGUCGgCGuCGAGCCGCaGGuGCa--GG- -5'
23742 5' -59.8 NC_005261.1 + 29404 0.73 0.347201
Target:  5'- gCGGCCGCGcGCUacgCGGCGgCCGCGgggCCc -3'
miRNA:   3'- gGUCGGCGU-CGA---GCCGCaGGUGCa--GG- -5'
23742 5' -59.8 NC_005261.1 + 97114 0.73 0.347201
Target:  5'- cCgGGCCGCGGCcggaGGCG-CCGCGgCCa -3'
miRNA:   3'- -GgUCGGCGUCGag--CCGCaGGUGCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.