miRNA display CGI


Results 61 - 80 of 419 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23742 5' -59.8 NC_005261.1 + 15367 0.73 0.347201
Target:  5'- cCCGGCgGC-GCUCGGCGcCCuCGgcgCCg -3'
miRNA:   3'- -GGUCGgCGuCGAGCCGCaGGuGCa--GG- -5'
23742 5' -59.8 NC_005261.1 + 103858 0.73 0.347201
Target:  5'- gCgAGCCGCGGCggCGGCGgggCgGCG-CCg -3'
miRNA:   3'- -GgUCGGCGUCGa-GCCGCa--GgUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 16203 0.73 0.351724
Target:  5'- -gGGCCGCgugauggccucgaGGCUCGGCcagcccucggggcgGUCgACGUCCg -3'
miRNA:   3'- ggUCGGCG-------------UCGAGCCG--------------CAGgUGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 102311 0.73 0.354762
Target:  5'- gCCGcgcGCCGCGGCcgCGGCGcgcagCCGCG-CCa -3'
miRNA:   3'- -GGU---CGGCGUCGa-GCCGCa----GGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 85565 0.73 0.354762
Target:  5'- --cGCCGCgaGGUUCGGCG-CCGCGaCCg -3'
miRNA:   3'- gguCGGCG--UCGAGCCGCaGGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 1445 0.73 0.354762
Target:  5'- aCCAGCgGCGGCgccUCGGCGUgCGgcUCCa -3'
miRNA:   3'- -GGUCGgCGUCG---AGCCGCAgGUgcAGG- -5'
23742 5' -59.8 NC_005261.1 + 57382 0.73 0.362438
Target:  5'- gCCcGCCaGCAGCUCGGgGagCGCGcCCg -3'
miRNA:   3'- -GGuCGG-CGUCGAGCCgCagGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 118230 0.73 0.369445
Target:  5'- aCGGCCGCGGCcgCGGCcuacgccGUCUGCGgcgugCCg -3'
miRNA:   3'- gGUCGGCGUCGa-GCCG-------CAGGUGCa----GG- -5'
23742 5' -59.8 NC_005261.1 + 108184 0.73 0.370229
Target:  5'- gCGGCCGCGGCUCcgGGCGcgagagCUGCG-CCa -3'
miRNA:   3'- gGUCGGCGUCGAG--CCGCa-----GGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 104051 0.73 0.370229
Target:  5'- aCuGCCGCAGCgccUCGGCcgcGagCGCGUCCa -3'
miRNA:   3'- gGuCGGCGUCG---AGCCG---CagGUGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 35056 0.73 0.370229
Target:  5'- gCGGCCGC-GCggCGGCGgucUCCGCGcCCc -3'
miRNA:   3'- gGUCGGCGuCGa-GCCGC---AGGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 100934 0.73 0.370229
Target:  5'- gCAGCCGCuGCa-GGC--CCGCGUCCa -3'
miRNA:   3'- gGUCGGCGuCGagCCGcaGGUGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 72969 0.73 0.375751
Target:  5'- gCCcGCCGCcgcggggguccgcgAGCgCGGCcagcgcGUCCGCGUCCg -3'
miRNA:   3'- -GGuCGGCG--------------UCGaGCCG------CAGGUGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 28835 0.73 0.378134
Target:  5'- gCGGCCGCGGCUgaGGCGgCCGuCGUggCCg -3'
miRNA:   3'- gGUCGGCGUCGAg-CCGCaGGU-GCA--GG- -5'
23742 5' -59.8 NC_005261.1 + 1649 0.73 0.378134
Target:  5'- cCCAgcGCCGC-GCUCuGCGcggCCAUGUCCu -3'
miRNA:   3'- -GGU--CGGCGuCGAGcCGCa--GGUGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 73445 0.73 0.378134
Target:  5'- aCCAGgC-CGGC-C-GCGUCCGCGUCCg -3'
miRNA:   3'- -GGUCgGcGUCGaGcCGCAGGUGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 97035 0.73 0.385345
Target:  5'- cCCGGCCGCccacauccacagGGCggggggCGGCGggcacgaUCCGCGUCg -3'
miRNA:   3'- -GGUCGGCG------------UCGa-----GCCGC-------AGGUGCAGg -5'
23742 5' -59.8 NC_005261.1 + 3542 0.73 0.386151
Target:  5'- cUCGGCgCGCAGCgCGGCGggCGCGgcgCCg -3'
miRNA:   3'- -GGUCG-GCGUCGaGCCGCagGUGCa--GG- -5'
23742 5' -59.8 NC_005261.1 + 4944 0.73 0.386151
Target:  5'- cCCGcGCCGCGGCccaGGCGcCCccggccgcgGCGUCCu -3'
miRNA:   3'- -GGU-CGGCGUCGag-CCGCaGG---------UGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 129725 0.73 0.386151
Target:  5'- gCCGGCUGCAGCggcagggCGGCGgggCC-CGgCCu -3'
miRNA:   3'- -GGUCGGCGUCGa------GCCGCa--GGuGCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.