miRNA display CGI


Results 81 - 100 of 419 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23742 5' -59.8 NC_005261.1 + 124071 0.72 0.39428
Target:  5'- cUCGGCCgacuGCAGCcCGGCGcCCGCGUa- -3'
miRNA:   3'- -GGUCGG----CGUCGaGCCGCaGGUGCAgg -5'
23742 5' -59.8 NC_005261.1 + 106849 0.72 0.39428
Target:  5'- uCCAGcCCGCcgccuggggGGCg-GGCGUCCGCGgCCu -3'
miRNA:   3'- -GGUC-GGCG---------UCGagCCGCAGGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 32323 0.72 0.39428
Target:  5'- gCGGCCGCGGCgccCGGCGUggCCugGg-- -3'
miRNA:   3'- gGUCGGCGUCGa--GCCGCA--GGugCagg -5'
23742 5' -59.8 NC_005261.1 + 134224 0.72 0.39428
Target:  5'- gCGGCCgGCAGCgUCGGCGUggcgcaCGCGcCCu -3'
miRNA:   3'- gGUCGG-CGUCG-AGCCGCAg-----GUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 45615 0.72 0.39428
Target:  5'- aCCGGCggCGCGGCgcggcgCGGCGggcCCGCG-CCg -3'
miRNA:   3'- -GGUCG--GCGUCGa-----GCCGCa--GGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 32223 0.72 0.402519
Target:  5'- gCCGGCCGCGGCggUGGCcuUCUGCGcggCCg -3'
miRNA:   3'- -GGUCGGCGUCGa-GCCGc-AGGUGCa--GG- -5'
23742 5' -59.8 NC_005261.1 + 95034 0.72 0.402519
Target:  5'- gCCGGCgGC-GCUCGGCG-CCGCaGaCCg -3'
miRNA:   3'- -GGUCGgCGuCGAGCCGCaGGUG-CaGG- -5'
23742 5' -59.8 NC_005261.1 + 83299 0.72 0.410866
Target:  5'- aCGGCUgcgcggggucguGCAGCUCgGGCGgcgCCACG-CCg -3'
miRNA:   3'- gGUCGG------------CGUCGAG-CCGCa--GGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 3670 0.72 0.410866
Target:  5'- -aGGCCGCGGC-CGGCaggCCGCGgCCc -3'
miRNA:   3'- ggUCGGCGUCGaGCCGca-GGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 92207 0.72 0.410866
Target:  5'- gCAGCCGCcgaAGC-CGGCGUCguCGgccCCg -3'
miRNA:   3'- gGUCGGCG---UCGaGCCGCAGguGCa--GG- -5'
23742 5' -59.8 NC_005261.1 + 79637 0.72 0.410866
Target:  5'- cCCGGCaGCAGCUCGuuGUCCuCG-CCg -3'
miRNA:   3'- -GGUCGgCGUCGAGCcgCAGGuGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 93823 0.72 0.410866
Target:  5'- gCCAccGCCGCAGCcgccgggCGGCG-CCGCcgagcaGUCCa -3'
miRNA:   3'- -GGU--CGGCGUCGa------GCCGCaGGUG------CAGG- -5'
23742 5' -59.8 NC_005261.1 + 84957 0.72 0.419319
Target:  5'- gCGGCCGCcGa--GGCGUCgggCGCGUCCg -3'
miRNA:   3'- gGUCGGCGuCgagCCGCAG---GUGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 92773 0.72 0.419319
Target:  5'- aCCgGGCCGagcccgGGCUCGGgGUCgGgGUCCg -3'
miRNA:   3'- -GG-UCGGCg-----UCGAGCCgCAGgUgCAGG- -5'
23742 5' -59.8 NC_005261.1 + 102941 0.72 0.419319
Target:  5'- gCC-GCCGCcGCUgCGGCGgcggCCGCGggcgCCg -3'
miRNA:   3'- -GGuCGGCGuCGA-GCCGCa---GGUGCa---GG- -5'
23742 5' -59.8 NC_005261.1 + 130338 0.72 0.42273
Target:  5'- cCCGGCCGC-GCUCGGgGacgcgcugcggguccUCUACG-CCa -3'
miRNA:   3'- -GGUCGGCGuCGAGCCgC---------------AGGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 4460 0.72 0.427878
Target:  5'- uCCAGCgGCGGCggcccgucgcgCGGCG-CCGCGgcguagCCu -3'
miRNA:   3'- -GGUCGgCGUCGa----------GCCGCaGGUGCa-----GG- -5'
23742 5' -59.8 NC_005261.1 + 101344 0.72 0.427878
Target:  5'- gCCuGCUGCAGCcacUCcaccGCGgCCACGUCCa -3'
miRNA:   3'- -GGuCGGCGUCG---AGc---CGCaGGUGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 123441 0.72 0.427878
Target:  5'- gCAGCCGCAGCUCGcGCaugacgccgUCGCGggCCu -3'
miRNA:   3'- gGUCGGCGUCGAGC-CGca-------GGUGCa-GG- -5'
23742 5' -59.8 NC_005261.1 + 77039 0.72 0.427878
Target:  5'- gCCGcGCgCGCGGCccUCGGCGaCCGCG-CCu -3'
miRNA:   3'- -GGU-CG-GCGUCG--AGCCGCaGGUGCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.