Results 1 - 20 of 419 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23742 | 5' | -59.8 | NC_005261.1 | + | 4292 | 0.66 | 0.779879 |
Target: 5'- aCGGCCGCgGGCcccgCGGCcG-CCGCGUa- -3' miRNA: 3'- gGUCGGCG-UCGa---GCCG-CaGGUGCAgg -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 66231 | 0.66 | 0.779879 |
Target: 5'- gCAGCCGCuGCUUGaUGcCCGcCGUCg -3' miRNA: 3'- gGUCGGCGuCGAGCcGCaGGU-GCAGg -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 41624 | 0.66 | 0.770839 |
Target: 5'- gCGGCUGCGGCccUCGGCGaCCuugaggugcGCGUg- -3' miRNA: 3'- gGUCGGCGUCG--AGCCGCaGG---------UGCAgg -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 121783 | 0.66 | 0.770839 |
Target: 5'- -uGGCCGCGGC-CGGCGggCugGg-- -3' miRNA: 3'- ggUCGGCGUCGaGCCGCagGugCagg -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 133338 | 0.66 | 0.770839 |
Target: 5'- gCCGGCaCGCGcGCgCGGCGcugCCGCG-Ca -3' miRNA: 3'- -GGUCG-GCGU-CGaGCCGCa--GGUGCaGg -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 115415 | 0.66 | 0.770839 |
Target: 5'- gCgGGCgGCAGC-CGGgG-CCGCGgCCc -3' miRNA: 3'- -GgUCGgCGUCGaGCCgCaGGUGCaGG- -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 60729 | 0.66 | 0.770839 |
Target: 5'- gCCA-CCGCGuGCUC-GUG-CUACGUCCu -3' miRNA: 3'- -GGUcGGCGU-CGAGcCGCaGGUGCAGG- -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 101104 | 0.66 | 0.770839 |
Target: 5'- gCGGCCGCGcGCgccUUGGCGcCCucgugGUCCu -3' miRNA: 3'- gGUCGGCGU-CG---AGCCGCaGGug---CAGG- -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 58539 | 0.66 | 0.770839 |
Target: 5'- cCCAGCCGCcgcccgGGCUCcuGCG-CCGuCGUggCCg -3' miRNA: 3'- -GGUCGGCG------UCGAGc-CGCaGGU-GCA--GG- -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 103942 | 0.66 | 0.770839 |
Target: 5'- gCCAGaCGCuGCagCGGCGcgaCCGCGgcggCCg -3' miRNA: 3'- -GGUCgGCGuCGa-GCCGCa--GGUGCa---GG- -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 105187 | 0.66 | 0.770839 |
Target: 5'- gCCGccGCCGCGGCa-GGCucGUCCGCuuUCCc -3' miRNA: 3'- -GGU--CGGCGUCGagCCG--CAGGUGc-AGG- -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 121087 | 0.66 | 0.770839 |
Target: 5'- gCGGCCGcCAGCgccuccaGGcCGUgCGgGUCCu -3' miRNA: 3'- gGUCGGC-GUCGag-----CC-GCAgGUgCAGG- -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 58262 | 0.66 | 0.770839 |
Target: 5'- gCCGcGCCGC-GCUCGccGCGcUCACGgggCCg -3' miRNA: 3'- -GGU-CGGCGuCGAGC--CGCaGGUGCa--GG- -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 107719 | 0.66 | 0.770839 |
Target: 5'- gCuGCCGCGGCa-GGCGgCUGCG-CCu -3' miRNA: 3'- gGuCGGCGUCGagCCGCaGGUGCaGG- -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 64981 | 0.66 | 0.770839 |
Target: 5'- gCC-GCCGCAGCgcgugcaGGUGcUCCAggagGUCCu -3' miRNA: 3'- -GGuCGGCGUCGag-----CCGC-AGGUg---CAGG- -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 1993 | 0.66 | 0.770839 |
Target: 5'- aUCGGCgGcCAGUucgCGGgGUCCACGgcgUCg -3' miRNA: 3'- -GGUCGgC-GUCGa--GCCgCAGGUGCa--GG- -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 56970 | 0.66 | 0.770839 |
Target: 5'- uCCGGCaGUGGUUCGGCagcgagcgcgugGaCCACGUCa -3' miRNA: 3'- -GGUCGgCGUCGAGCCG------------CaGGUGCAGg -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 10751 | 0.66 | 0.770839 |
Target: 5'- cCCGGuCCuCGGcCUCGuCGUCCucguCGUCCu -3' miRNA: 3'- -GGUC-GGcGUC-GAGCcGCAGGu---GCAGG- -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 95632 | 0.66 | 0.770839 |
Target: 5'- uCCAGgaGCGGCUgGGCGagCGCGa-- -3' miRNA: 3'- -GGUCggCGUCGAgCCGCagGUGCagg -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 23048 | 0.66 | 0.769928 |
Target: 5'- aCGGCgGCAGCacccucagcuucuUCGuCGUCCucguaguCGUCCu -3' miRNA: 3'- gGUCGgCGUCG-------------AGCcGCAGGu------GCAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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