miRNA display CGI


Results 21 - 40 of 419 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23742 5' -59.8 NC_005261.1 + 23048 0.66 0.769928
Target:  5'- aCGGCgGCAGCacccucagcuucuUCGuCGUCCucguaguCGUCCu -3'
miRNA:   3'- gGUCGgCGUCG-------------AGCcGCAGGu------GCAGG- -5'
23742 5' -59.8 NC_005261.1 + 39005 0.66 0.761683
Target:  5'- gCCAGCgCGCccacGCgcaGaGCGUCCGCGagcagcUCCa -3'
miRNA:   3'- -GGUCG-GCGu---CGag-C-CGCAGGUGC------AGG- -5'
23742 5' -59.8 NC_005261.1 + 31926 0.66 0.761683
Target:  5'- --cGCCGCcGCUgGGCucugCCGCGgcgCCa -3'
miRNA:   3'- gguCGGCGuCGAgCCGca--GGUGCa--GG- -5'
23742 5' -59.8 NC_005261.1 + 88187 0.66 0.761683
Target:  5'- gCCGGCgGC-GC-CGGCGaggcgggCCGCG-CCg -3'
miRNA:   3'- -GGUCGgCGuCGaGCCGCa------GGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 125941 0.66 0.761683
Target:  5'- gUAGCCGCuGGCgCGGgGUCgCACGg-- -3'
miRNA:   3'- gGUCGGCG-UCGaGCCgCAG-GUGCagg -5'
23742 5' -59.8 NC_005261.1 + 12653 0.66 0.761683
Target:  5'- -gGGCCGC-GC-CGGCGcgacaUCguCGUCCu -3'
miRNA:   3'- ggUCGGCGuCGaGCCGC-----AGguGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 70674 0.66 0.761683
Target:  5'- gCgGGCCGCAcCUCcagccaGGCGUCCAgCGcggCCc -3'
miRNA:   3'- -GgUCGGCGUcGAG------CCGCAGGU-GCa--GG- -5'
23742 5' -59.8 NC_005261.1 + 2641 0.66 0.761683
Target:  5'- cCCAGCaCGCgGGCgggcagCGGCGgcucccgCCGCG-CUg -3'
miRNA:   3'- -GGUCG-GCG-UCGa-----GCCGCa------GGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 88596 0.66 0.761683
Target:  5'- -aGGCC-CGGCcCGGCGgcgCCACGgUCg -3'
miRNA:   3'- ggUCGGcGUCGaGCCGCa--GGUGC-AGg -5'
23742 5' -59.8 NC_005261.1 + 49199 0.66 0.761683
Target:  5'- cUCGGCCGaCAGCgagGGCGggaggCCgGCGcCCa -3'
miRNA:   3'- -GGUCGGC-GUCGag-CCGCa----GG-UGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 87016 0.66 0.761683
Target:  5'- gCCaAGUgCGCGGCccCGcGCGccaCCGCGUCCa -3'
miRNA:   3'- -GG-UCG-GCGUCGa-GC-CGCa--GGUGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 107359 0.66 0.761683
Target:  5'- aCCugcGUCGUcgugGGCgccggGGCGcCCGCGUCCa -3'
miRNA:   3'- -GGu--CGGCG----UCGag---CCGCaGGUGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 75533 0.66 0.761683
Target:  5'- gCCGcGCUGCAGC--GGC-UgCGCGUCCu -3'
miRNA:   3'- -GGU-CGGCGUCGagCCGcAgGUGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 81401 0.66 0.758915
Target:  5'- cCCGGCCucccCAGCUcccccaggcacaggCGGCGUCguCGgCCg -3'
miRNA:   3'- -GGUCGGc---GUCGA--------------GCCGCAGguGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 59726 0.66 0.752419
Target:  5'- cCgGGCgGCAGCggCGGCGcgcggCCGCccUCCa -3'
miRNA:   3'- -GgUCGgCGUCGa-GCCGCa----GGUGc-AGG- -5'
23742 5' -59.8 NC_005261.1 + 70101 0.66 0.752419
Target:  5'- gCCGGCgaGaAGCUCGGCG-CCuCGUgCCc -3'
miRNA:   3'- -GGUCGg-CgUCGAGCCGCaGGuGCA-GG- -5'
23742 5' -59.8 NC_005261.1 + 101826 0.66 0.752419
Target:  5'- uCCAGCgCGCGGCUgaucuccgcCGcGCGcCCGCcggCCg -3'
miRNA:   3'- -GGUCG-GCGUCGA---------GC-CGCaGGUGca-GG- -5'
23742 5' -59.8 NC_005261.1 + 74951 0.66 0.752419
Target:  5'- gCGGgCGC-GCUCGGCGcgcucgaggCCGCGcgCCc -3'
miRNA:   3'- gGUCgGCGuCGAGCCGCa--------GGUGCa-GG- -5'
23742 5' -59.8 NC_005261.1 + 5284 0.66 0.752419
Target:  5'- gCCGGCCGCGGUgCGcGCGggucCCugGa-- -3'
miRNA:   3'- -GGUCGGCGUCGaGC-CGCa---GGugCagg -5'
23742 5' -59.8 NC_005261.1 + 30195 0.66 0.752419
Target:  5'- gCGGCCGCcGCgcuggaGGCGgCCGCG-CUg -3'
miRNA:   3'- gGUCGGCGuCGag----CCGCaGGUGCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.