miRNA display CGI


Results 41 - 60 of 419 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23742 5' -59.8 NC_005261.1 + 74951 0.66 0.752419
Target:  5'- gCGGgCGC-GCUCGGCGcgcucgaggCCGCGcgCCc -3'
miRNA:   3'- gGUCgGCGuCGAGCCGCa--------GGUGCa-GG- -5'
23742 5' -59.8 NC_005261.1 + 129885 0.66 0.752419
Target:  5'- cUCGGCCGCcauGCggaUGGCcugGUCCACcaugcuGUCCg -3'
miRNA:   3'- -GGUCGGCGu--CGa--GCCG---CAGGUG------CAGG- -5'
23742 5' -59.8 NC_005261.1 + 30195 0.66 0.752419
Target:  5'- gCGGCCGCcGCgcuggaGGCGgCCGCG-CUg -3'
miRNA:   3'- gGUCGGCGuCGag----CCGCaGGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 135028 0.66 0.752419
Target:  5'- gCGGCCGCGGC--GGCGaggCCgACG-CCu -3'
miRNA:   3'- gGUCGGCGUCGagCCGCa--GG-UGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 116922 0.66 0.752419
Target:  5'- aCAGCCGCcgcgGGCUgcUGGaCGccuUCCGCG-CCa -3'
miRNA:   3'- gGUCGGCG----UCGA--GCC-GC---AGGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 101826 0.66 0.752419
Target:  5'- uCCAGCgCGCGGCUgaucuccgcCGcGCGcCCGCcggCCg -3'
miRNA:   3'- -GGUCG-GCGUCGA---------GC-CGCaGGUGca-GG- -5'
23742 5' -59.8 NC_005261.1 + 57434 0.66 0.752419
Target:  5'- cCCAGgaugcgcacCCGC-GCgaCGGCGUCCGCGa-- -3'
miRNA:   3'- -GGUC---------GGCGuCGa-GCCGCAGGUGCagg -5'
23742 5' -59.8 NC_005261.1 + 87580 0.66 0.752419
Target:  5'- cCCGcGCCGCccaGGC-CGGUGgUCUugGUgCCg -3'
miRNA:   3'- -GGU-CGGCG---UCGaGCCGC-AGGugCA-GG- -5'
23742 5' -59.8 NC_005261.1 + 59726 0.66 0.752419
Target:  5'- cCgGGCgGCAGCggCGGCGcgcggCCGCccUCCa -3'
miRNA:   3'- -GgUCGgCGUCGa-GCCGCa----GGUGc-AGG- -5'
23742 5' -59.8 NC_005261.1 + 25742 0.66 0.752419
Target:  5'- aCCgGGCCGC-GCUCGGCGaUCgAuuUGcCCa -3'
miRNA:   3'- -GG-UCGGCGuCGAGCCGC-AGgU--GCaGG- -5'
23742 5' -59.8 NC_005261.1 + 19382 0.66 0.748686
Target:  5'- gCCAgGCCGUaguagcggGGCUCGGUGaucggcccgugugCCGCG-CCg -3'
miRNA:   3'- -GGU-CGGCG--------UCGAGCCGCa------------GGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 83075 0.66 0.743057
Target:  5'- cCCcGCgGCGGC-CGGCGcuUCCAgCGccUCCa -3'
miRNA:   3'- -GGuCGgCGUCGaGCCGC--AGGU-GC--AGG- -5'
23742 5' -59.8 NC_005261.1 + 37482 0.66 0.743057
Target:  5'- cCCGG-CGUaucgGGaCUUGGcCGUCCAgGUCCu -3'
miRNA:   3'- -GGUCgGCG----UC-GAGCC-GCAGGUgCAGG- -5'
23742 5' -59.8 NC_005261.1 + 86928 0.66 0.743057
Target:  5'- aCCGccGCCGCcGCgcgCGGCGggCugGUCa -3'
miRNA:   3'- -GGU--CGGCGuCGa--GCCGCagGugCAGg -5'
23742 5' -59.8 NC_005261.1 + 51063 0.66 0.743057
Target:  5'- aCGGCgGCuuuCUCGGCGUaCACGgCCc -3'
miRNA:   3'- gGUCGgCGuc-GAGCCGCAgGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 135754 0.66 0.743057
Target:  5'- cUCAGCCGCGcggugcGCUcCGGCGcagagCGCGUgCCg -3'
miRNA:   3'- -GGUCGGCGU------CGA-GCCGCag---GUGCA-GG- -5'
23742 5' -59.8 NC_005261.1 + 56824 0.66 0.743057
Target:  5'- uCCugguGCCGCGGCggcaCGGCaagaCCugGUUCc -3'
miRNA:   3'- -GGu---CGGCGUCGa---GCCGca--GGugCAGG- -5'
23742 5' -59.8 NC_005261.1 + 65271 0.66 0.743057
Target:  5'- uUCAGCCGguGC-CGGU--CCACGcUCa -3'
miRNA:   3'- -GGUCGGCguCGaGCCGcaGGUGC-AGg -5'
23742 5' -59.8 NC_005261.1 + 15170 0.66 0.743057
Target:  5'- -gGGCguaGCGGCggCGGCGcCCGCGggaaacgCCg -3'
miRNA:   3'- ggUCGg--CGUCGa-GCCGCaGGUGCa------GG- -5'
23742 5' -59.8 NC_005261.1 + 1177 0.66 0.743057
Target:  5'- cCCGcGCCGCGGC-CGGgG-CCGgGgCCg -3'
miRNA:   3'- -GGU-CGGCGUCGaGCCgCaGGUgCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.