miRNA display CGI


Results 61 - 80 of 419 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23742 5' -59.8 NC_005261.1 + 93459 0.66 0.742115
Target:  5'- aCCGGCCcCAGCgCGGUG-CCggggcgcGCGUCg -3'
miRNA:   3'- -GGUCGGcGUCGaGCCGCaGG-------UGCAGg -5'
23742 5' -59.8 NC_005261.1 + 3390 0.66 0.737395
Target:  5'- gCCAGCCGCgccggcacuuccgccGGCgggcugaagagCGcGCGggCCAgCGUCCa -3'
miRNA:   3'- -GGUCGGCG---------------UCGa----------GC-CGCa-GGU-GCAGG- -5'
23742 5' -59.8 NC_005261.1 + 90783 0.66 0.733603
Target:  5'- gCC-GCUGCGGCggcCGGCGcgcgcuaCCGCGUgCg -3'
miRNA:   3'- -GGuCGGCGUCGa--GCCGCa------GGUGCAgG- -5'
23742 5' -59.8 NC_005261.1 + 81968 0.66 0.733603
Target:  5'- aCAGCgCGguGUUCGGCGgCUGCG-Cg -3'
miRNA:   3'- gGUCG-GCguCGAGCCGCaGGUGCaGg -5'
23742 5' -59.8 NC_005261.1 + 35934 0.66 0.733603
Target:  5'- gCAGCC-CAGCg-GGCGcCCAgGcCCg -3'
miRNA:   3'- gGUCGGcGUCGagCCGCaGGUgCaGG- -5'
23742 5' -59.8 NC_005261.1 + 55849 0.66 0.733603
Target:  5'- cCCGGuCCGC-GC-CGGCGcggaCCAaGUCCa -3'
miRNA:   3'- -GGUC-GGCGuCGaGCCGCa---GGUgCAGG- -5'
23742 5' -59.8 NC_005261.1 + 5508 0.66 0.733603
Target:  5'- -gGGCCGCGGCagCGGCGgcgaggCCGCcggCUu -3'
miRNA:   3'- ggUCGGCGUCGa-GCCGCa-----GGUGca-GG- -5'
23742 5' -59.8 NC_005261.1 + 52837 0.66 0.733603
Target:  5'- -gGGCCGCcucGC-CGGUGUcCCACGUg- -3'
miRNA:   3'- ggUCGGCGu--CGaGCCGCA-GGUGCAgg -5'
23742 5' -59.8 NC_005261.1 + 117733 0.66 0.733603
Target:  5'- gCGGCCGCGcGCU-GGCG-CCGcCGcCCc -3'
miRNA:   3'- gGUCGGCGU-CGAgCCGCaGGU-GCaGG- -5'
23742 5' -59.8 NC_005261.1 + 120251 0.66 0.732652
Target:  5'- --cGCCGCGGCUgccacgcCGGCcGUCUACcGcCCg -3'
miRNA:   3'- gguCGGCGUCGA-------GCCG-CAGGUG-CaGG- -5'
23742 5' -59.8 NC_005261.1 + 63031 0.67 0.72789
Target:  5'- gCCGGCgccCGCGGCgaGGCGgucgcgcagcagcgCCGCGUCg -3'
miRNA:   3'- -GGUCG---GCGUCGagCCGCa-------------GGUGCAGg -5'
23742 5' -59.8 NC_005261.1 + 3340 0.67 0.725023
Target:  5'- cCCGcGCCGCGGCgccCGGCGcgccggccuucagggCCGCGagCg -3'
miRNA:   3'- -GGU-CGGCGUCGa--GCCGCa--------------GGUGCagG- -5'
23742 5' -59.8 NC_005261.1 + 105905 0.67 0.724066
Target:  5'- uCCGGgCGCGggccGCUCGcGCGcgcCCACG-CCg -3'
miRNA:   3'- -GGUCgGCGU----CGAGC-CGCa--GGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 35676 0.67 0.724066
Target:  5'- gCCGGCCGCAcccccGC-CGGCGagCCcCGgugggCCg -3'
miRNA:   3'- -GGUCGGCGU-----CGaGCCGCa-GGuGCa----GG- -5'
23742 5' -59.8 NC_005261.1 + 103610 0.67 0.724066
Target:  5'- gCGGCgGCAGCgcgggaggCGGCGgcggCCAuCG-CCu -3'
miRNA:   3'- gGUCGgCGUCGa-------GCCGCa---GGU-GCaGG- -5'
23742 5' -59.8 NC_005261.1 + 133100 0.67 0.724066
Target:  5'- -aGGCCGCcgucaaccgcgcGGCcuuccaCGGCGUgCGCGUCUc -3'
miRNA:   3'- ggUCGGCG------------UCGa-----GCCGCAgGUGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 93633 0.67 0.724066
Target:  5'- gCCAGCagcaGCAGCgCGaG-GUCCGCGUa- -3'
miRNA:   3'- -GGUCGg---CGUCGaGC-CgCAGGUGCAgg -5'
23742 5' -59.8 NC_005261.1 + 76121 0.67 0.724066
Target:  5'- aCCGcGCCGC-GC-CGGCG-CC-CGUCg -3'
miRNA:   3'- -GGU-CGGCGuCGaGCCGCaGGuGCAGg -5'
23742 5' -59.8 NC_005261.1 + 86357 0.67 0.724066
Target:  5'- --cGCC-CGGCgaaGGCGcCCGCGUCg -3'
miRNA:   3'- gguCGGcGUCGag-CCGCaGGUGCAGg -5'
23742 5' -59.8 NC_005261.1 + 125714 0.67 0.724066
Target:  5'- aCGGCCGCcgcgGGCUCGGCuGgggCCGCc--- -3'
miRNA:   3'- gGUCGGCG----UCGAGCCG-Ca--GGUGcagg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.