miRNA display CGI


Results 81 - 100 of 419 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23742 5' -59.8 NC_005261.1 + 63744 0.67 0.718308
Target:  5'- -uGGCCGCGGC--GGCGUaggccgccguguagcCCACG-CCg -3'
miRNA:   3'- ggUCGGCGUCGagCCGCA---------------GGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 100130 0.67 0.714455
Target:  5'- aCCGGCCGCAgcccccGCUCGGCcagCgagaagcacagCGCGcCCa -3'
miRNA:   3'- -GGUCGGCGU------CGAGCCGca-G-----------GUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 18135 0.67 0.714455
Target:  5'- gCAGCCGCAggcccagucGCcgaUGGCGUCCuCcUCCg -3'
miRNA:   3'- gGUCGGCGU---------CGa--GCCGCAGGuGcAGG- -5'
23742 5' -59.8 NC_005261.1 + 111032 0.67 0.714455
Target:  5'- aCCuGCCGCAGCga-GCG-CUACaaGUCCu -3'
miRNA:   3'- -GGuCGGCGUCGagcCGCaGGUG--CAGG- -5'
23742 5' -59.8 NC_005261.1 + 70899 0.67 0.714455
Target:  5'- -uGGCCGUgcaCUUGcGCG-CCACGUCCc -3'
miRNA:   3'- ggUCGGCGuc-GAGC-CGCaGGUGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 118948 0.67 0.714455
Target:  5'- gCUGGCCGCGGCgcacgUGGCcaagGUCCugcACG-CCg -3'
miRNA:   3'- -GGUCGGCGUCGa----GCCG----CAGG---UGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 68294 0.67 0.714455
Target:  5'- cCCGGCCGCgGGCgCGGaCcUCUGCGgCCg -3'
miRNA:   3'- -GGUCGGCG-UCGaGCC-GcAGGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 102432 0.67 0.714455
Target:  5'- gCGGCCGCcucCUCGGCGcgCCGC--CCg -3'
miRNA:   3'- gGUCGGCGuc-GAGCCGCa-GGUGcaGG- -5'
23742 5' -59.8 NC_005261.1 + 103913 0.67 0.714455
Target:  5'- cCCGcGCCGcCAGgUCgGGCG-CgGCGUCUg -3'
miRNA:   3'- -GGU-CGGC-GUCgAG-CCGCaGgUGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 94619 0.67 0.714455
Target:  5'- cCCucGCCGCcGC-CGGCG-CCGuCGUCg -3'
miRNA:   3'- -GGu-CGGCGuCGaGCCGCaGGU-GCAGg -5'
23742 5' -59.8 NC_005261.1 + 116513 0.67 0.71349
Target:  5'- --cGCCGCcGCggCGGCGcgaggcccgccgcUCCGCGcCCg -3'
miRNA:   3'- gguCGGCGuCGa-GCCGC-------------AGGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 46504 0.67 0.704779
Target:  5'- -gGGgCGCAGCcCGGCGUcgcgcagcaCCGCcUCCg -3'
miRNA:   3'- ggUCgGCGUCGaGCCGCA---------GGUGcAGG- -5'
23742 5' -59.8 NC_005261.1 + 3005 0.67 0.704779
Target:  5'- cCCGgcGCCGgGGCUCccgcgGGCcUCCcCGUCCc -3'
miRNA:   3'- -GGU--CGGCgUCGAG-----CCGcAGGuGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 130914 0.67 0.704779
Target:  5'- aCGGUCGCcGCUuacCGGCGgcUCUACG-CCa -3'
miRNA:   3'- gGUCGGCGuCGA---GCCGC--AGGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 64038 0.67 0.704779
Target:  5'- gUCGG-CGCGGCUCuGCG-CCGCGUg- -3'
miRNA:   3'- -GGUCgGCGUCGAGcCGCaGGUGCAgg -5'
23742 5' -59.8 NC_005261.1 + 46677 0.67 0.704779
Target:  5'- -uGGCCGCGcGCUccaCGGCGgccgCCACGg-- -3'
miRNA:   3'- ggUCGGCGU-CGA---GCCGCa---GGUGCagg -5'
23742 5' -59.8 NC_005261.1 + 80877 0.67 0.695044
Target:  5'- cUCAGCCGCgcgGGCUucagCGGCGccUCCcagGgGUCCu -3'
miRNA:   3'- -GGUCGGCG---UCGA----GCCGC--AGG---UgCAGG- -5'
23742 5' -59.8 NC_005261.1 + 12422 0.67 0.695044
Target:  5'- uCCAGggGCGGCggagggcuugCGGCGUcggCCGCGUCg -3'
miRNA:   3'- -GGUCggCGUCGa---------GCCGCA---GGUGCAGg -5'
23742 5' -59.8 NC_005261.1 + 60247 0.67 0.695044
Target:  5'- uCC-GCCGCGGCgggagCGGCGgCCgugaagagGCGcCCg -3'
miRNA:   3'- -GGuCGGCGUCGa----GCCGCaGG--------UGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 19342 0.67 0.695044
Target:  5'- aCguGCCaGCAGCUCGGgGgaguucgucUCCAgGgugCCa -3'
miRNA:   3'- -GguCGG-CGUCGAGCCgC---------AGGUgCa--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.