miRNA display CGI


Results 101 - 120 of 419 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23742 5' -59.8 NC_005261.1 + 63953 0.67 0.695044
Target:  5'- gCAGCCccgugcGCAGCUgGuGCGUCaGCG-CCa -3'
miRNA:   3'- gGUCGG------CGUCGAgC-CGCAGgUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 102390 0.67 0.695044
Target:  5'- gCGGCgCGCAGCUCcucGCG-CCAgCGcUCCu -3'
miRNA:   3'- gGUCG-GCGUCGAGc--CGCaGGU-GC-AGG- -5'
23742 5' -59.8 NC_005261.1 + 12422 0.67 0.695044
Target:  5'- uCCAGggGCGGCggagggcuugCGGCGUcggCCGCGUCg -3'
miRNA:   3'- -GGUCggCGUCGa---------GCCGCA---GGUGCAGg -5'
23742 5' -59.8 NC_005261.1 + 44008 0.67 0.695044
Target:  5'- cCCAGCC-CGGCuUCGGCG-CgGCGg-- -3'
miRNA:   3'- -GGUCGGcGUCG-AGCCGCaGgUGCagg -5'
23742 5' -59.8 NC_005261.1 + 80877 0.67 0.695044
Target:  5'- cUCAGCCGCgcgGGCUucagCGGCGccUCCcagGgGUCCu -3'
miRNA:   3'- -GGUCGGCG---UCGA----GCCGC--AGG---UgCAGG- -5'
23742 5' -59.8 NC_005261.1 + 107327 0.67 0.695044
Target:  5'- nCAGCuCGCccAGCaCGGCcUCCGCGUUg -3'
miRNA:   3'- gGUCG-GCG--UCGaGCCGcAGGUGCAGg -5'
23742 5' -59.8 NC_005261.1 + 32593 0.67 0.695044
Target:  5'- uCCu-CCGCGuccucCUCGuCGUCCGCGUCCu -3'
miRNA:   3'- -GGucGGCGUc----GAGCcGCAGGUGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 130432 0.67 0.695044
Target:  5'- cCCGGCCGCGGCgccuacgUGGUcUCCuACGaCUg -3'
miRNA:   3'- -GGUCGGCGUCGa------GCCGcAGG-UGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 115489 0.67 0.685261
Target:  5'- cUCGGCCGCGGC--GGCGcgCCGCaGcCCc -3'
miRNA:   3'- -GGUCGGCGUCGagCCGCa-GGUG-CaGG- -5'
23742 5' -59.8 NC_005261.1 + 93667 0.67 0.685261
Target:  5'- aCCGGuCCGCgGGCggCGGCGcCgGCGgggcgCCg -3'
miRNA:   3'- -GGUC-GGCG-UCGa-GCCGCaGgUGCa----GG- -5'
23742 5' -59.8 NC_005261.1 + 22823 0.67 0.685261
Target:  5'- gCCGccGCCGCcguuggcgccgGGCUCGGggaagaacacguCGUCCucgcCGUCCg -3'
miRNA:   3'- -GGU--CGGCG-----------UCGAGCC------------GCAGGu---GCAGG- -5'
23742 5' -59.8 NC_005261.1 + 98130 0.67 0.685261
Target:  5'- --cGCCGCGGCaccggCGGCcGUCgGCGgcaaggCCg -3'
miRNA:   3'- gguCGGCGUCGa----GCCG-CAGgUGCa-----GG- -5'
23742 5' -59.8 NC_005261.1 + 22742 0.67 0.685261
Target:  5'- gUCGGgCGCGGggCGGCGgcggCCcacGCGUCUg -3'
miRNA:   3'- -GGUCgGCGUCgaGCCGCa---GG---UGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 30332 0.67 0.685261
Target:  5'- gCCGG-CGCGGCU-GGCGgCCGCGcUCg -3'
miRNA:   3'- -GGUCgGCGUCGAgCCGCaGGUGC-AGg -5'
23742 5' -59.8 NC_005261.1 + 93912 0.67 0.685261
Target:  5'- gCGGgCGCGGCgcccgCGGgcuugcgcCGUCCGCGggcgCCg -3'
miRNA:   3'- gGUCgGCGUCGa----GCC--------GCAGGUGCa---GG- -5'
23742 5' -59.8 NC_005261.1 + 33261 0.67 0.685261
Target:  5'- gCCGGCCGUcg--CGGCccccGUCCcCGUCCc -3'
miRNA:   3'- -GGUCGGCGucgaGCCG----CAGGuGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 119516 0.67 0.685261
Target:  5'- aCAGCaCGCGGCccCGGUccCCGCGgCCg -3'
miRNA:   3'- gGUCG-GCGUCGa-GCCGcaGGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 134726 0.67 0.685261
Target:  5'- cCCGGCCGggaccCGGaCUCGGCGacggcacCCGCGaCCc -3'
miRNA:   3'- -GGUCGGC-----GUC-GAGCCGCa------GGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 103397 0.67 0.685261
Target:  5'- gCGGCCGCcugcgccuccAGCUCcGCGcgggCCGCGgCCa -3'
miRNA:   3'- gGUCGGCG----------UCGAGcCGCa---GGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 101035 0.67 0.685261
Target:  5'- gCGGCCgGCAGC-CGcGCGUagugcuCGUCCg -3'
miRNA:   3'- gGUCGG-CGUCGaGC-CGCAggu---GCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.