miRNA display CGI


Results 1 - 20 of 419 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23742 5' -59.8 NC_005261.1 + 250 0.69 0.586425
Target:  5'- cCCGGCUGCGGCggcggcugCGGCGgcggCUGCGg-- -3'
miRNA:   3'- -GGUCGGCGUCGa-------GCCGCa---GGUGCagg -5'
23742 5' -59.8 NC_005261.1 + 317 0.7 0.499805
Target:  5'- gCGGCgGCGGCUgCGGCGgcggCUGCGgcggCCc -3'
miRNA:   3'- gGUCGgCGUCGA-GCCGCa---GGUGCa---GG- -5'
23742 5' -59.8 NC_005261.1 + 393 0.77 0.205037
Target:  5'- gCGGCgGCGGCggCGGCagcgGUCCugGUCCc -3'
miRNA:   3'- gGUCGgCGUCGa-GCCG----CAGGugCAGG- -5'
23742 5' -59.8 NC_005261.1 + 558 0.67 0.695044
Target:  5'- cUCGGCCGCcGCgCGGUGacaCUACGcUCCu -3'
miRNA:   3'- -GGUCGGCGuCGaGCCGCa--GGUGC-AGG- -5'
23742 5' -59.8 NC_005261.1 + 643 0.68 0.635882
Target:  5'- gCGGCCGcCAGCgccGCGUCCcCGgcgCCg -3'
miRNA:   3'- gGUCGGC-GUCGagcCGCAGGuGCa--GG- -5'
23742 5' -59.8 NC_005261.1 + 1177 0.66 0.743057
Target:  5'- cCCGcGCCGCGGC-CGGgG-CCGgGgCCg -3'
miRNA:   3'- -GGU-CGGCGUCGaGCCgCaGGUgCaGG- -5'
23742 5' -59.8 NC_005261.1 + 1406 0.77 0.215075
Target:  5'- gCGGCCGCGGCggcggcgggggCGGCGcCCGCcUCCa -3'
miRNA:   3'- gGUCGGCGUCGa----------GCCGCaGGUGcAGG- -5'
23742 5' -59.8 NC_005261.1 + 1445 0.73 0.354762
Target:  5'- aCCAGCgGCGGCgccUCGGCGUgCGgcUCCa -3'
miRNA:   3'- -GGUCGgCGUCG---AGCCGCAgGUgcAGG- -5'
23742 5' -59.8 NC_005261.1 + 1505 0.69 0.566813
Target:  5'- gCGGCCgGCAGCUCgucgGGCG-CCAgcUCCa -3'
miRNA:   3'- gGUCGG-CGUCGAG----CCGCaGGUgcAGG- -5'
23742 5' -59.8 NC_005261.1 + 1562 0.69 0.60616
Target:  5'- aCCGGCCGCAGC--GGCGcgCCGag-CCc -3'
miRNA:   3'- -GGUCGGCGUCGagCCGCa-GGUgcaGG- -5'
23742 5' -59.8 NC_005261.1 + 1649 0.73 0.378134
Target:  5'- cCCAgcGCCGC-GCUCuGCGcggCCAUGUCCu -3'
miRNA:   3'- -GGU--CGGCGuCGAGcCGCa--GGUGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 1795 0.71 0.472155
Target:  5'- -gAGCCGCAGCggCGGCGcCC-CGggguagagCCg -3'
miRNA:   3'- ggUCGGCGUCGa-GCCGCaGGuGCa-------GG- -5'
23742 5' -59.8 NC_005261.1 + 1993 0.66 0.770839
Target:  5'- aUCGGCgGcCAGUucgCGGgGUCCACGgcgUCg -3'
miRNA:   3'- -GGUCGgC-GUCGa--GCCgCAGGUGCa--GG- -5'
23742 5' -59.8 NC_005261.1 + 2053 0.7 0.509182
Target:  5'- gCCAGCCGCAGgcagagguaCUCGaccGCG-CCGCGgaaggCCa -3'
miRNA:   3'- -GGUCGGCGUC---------GAGC---CGCaGGUGCa----GG- -5'
23742 5' -59.8 NC_005261.1 + 2378 0.71 0.445299
Target:  5'- gCC-GCCGCAGCggcgcgcuggCGGCGagCGCGcCCg -3'
miRNA:   3'- -GGuCGGCGUCGa---------GCCGCagGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 2473 0.66 0.752419
Target:  5'- gCCGGgCGCcagGGCUCGGgGaagagcggguggUCCGCGagCCg -3'
miRNA:   3'- -GGUCgGCG---UCGAGCCgC------------AGGUGCa-GG- -5'
23742 5' -59.8 NC_005261.1 + 2641 0.66 0.761683
Target:  5'- cCCAGCaCGCgGGCgggcagCGGCGgcucccgCCGCG-CUg -3'
miRNA:   3'- -GGUCG-GCG-UCGa-----GCCGCa------GGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 2826 0.68 0.665578
Target:  5'- cCCAGCCcgagcucggGCGGCagggcCGGCGgcccCCuCGUCCc -3'
miRNA:   3'- -GGUCGG---------CGUCGa----GCCGCa---GGuGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 3005 0.67 0.704779
Target:  5'- cCCGgcGCCGgGGCUCccgcgGGCcUCCcCGUCCc -3'
miRNA:   3'- -GGU--CGGCgUCGAG-----CCGcAGGuGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 3160 0.66 0.752419
Target:  5'- -aGGCCcCGGCggCGGCGgccucuUCCuCGUCCu -3'
miRNA:   3'- ggUCGGcGUCGa-GCCGC------AGGuGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.