miRNA display CGI


Results 21 - 40 of 419 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23742 5' -59.8 NC_005261.1 + 3340 0.67 0.725023
Target:  5'- cCCGcGCCGCGGCgccCGGCGcgccggccuucagggCCGCGagCg -3'
miRNA:   3'- -GGU-CGGCGUCGa--GCCGCa--------------GGUGCagG- -5'
23742 5' -59.8 NC_005261.1 + 3390 0.66 0.737395
Target:  5'- gCCAGCCGCgccggcacuuccgccGGCgggcugaagagCGcGCGggCCAgCGUCCa -3'
miRNA:   3'- -GGUCGGCG---------------UCGa----------GC-CGCa-GGU-GCAGG- -5'
23742 5' -59.8 NC_005261.1 + 3542 0.73 0.386151
Target:  5'- cUCGGCgCGCAGCgCGGCGggCGCGgcgCCg -3'
miRNA:   3'- -GGUCG-GCGUCGaGCCGCagGUGCa--GG- -5'
23742 5' -59.8 NC_005261.1 + 3670 0.72 0.410866
Target:  5'- -aGGCCGCGGC-CGGCaggCCGCGgCCc -3'
miRNA:   3'- ggUCGGCGUCGaGCCGca-GGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 3801 0.69 0.5766
Target:  5'- gCCAGCuCGCGcagccGCUCGcGCGcugCCGCGggcCCg -3'
miRNA:   3'- -GGUCG-GCGU-----CGAGC-CGCa--GGUGCa--GG- -5'
23742 5' -59.8 NC_005261.1 + 3843 0.71 0.481288
Target:  5'- gCUGGCgGCAGCggcgcCGGCG-CCGCGcggCCg -3'
miRNA:   3'- -GGUCGgCGUCGa----GCCGCaGGUGCa--GG- -5'
23742 5' -59.8 NC_005261.1 + 3882 0.77 0.210005
Target:  5'- aCGGCgCGCAGCUCGGCGagCGCGg-- -3'
miRNA:   3'- gGUCG-GCGUCGAGCCGCagGUGCagg -5'
23742 5' -59.8 NC_005261.1 + 3990 0.69 0.586425
Target:  5'- uUCGGUCGCAGUcguagCGGCGgcucauggCCACGcaggCCg -3'
miRNA:   3'- -GGUCGGCGUCGa----GCCGCa-------GGUGCa---GG- -5'
23742 5' -59.8 NC_005261.1 + 4082 0.68 0.645793
Target:  5'- aCCGGCgGCAGC--GGCGccgUCACGcUCCc -3'
miRNA:   3'- -GGUCGgCGUCGagCCGCa--GGUGC-AGG- -5'
23742 5' -59.8 NC_005261.1 + 4292 0.66 0.779879
Target:  5'- aCGGCCGCgGGCcccgCGGCcG-CCGCGUa- -3'
miRNA:   3'- gGUCGGCG-UCGa---GCCG-CaGGUGCAgg -5'
23742 5' -59.8 NC_005261.1 + 4460 0.72 0.427878
Target:  5'- uCCAGCgGCGGCggcccgucgcgCGGCG-CCGCGgcguagCCu -3'
miRNA:   3'- -GGUCGgCGUCGa----------GCCGCaGGUGCa-----GG- -5'
23742 5' -59.8 NC_005261.1 + 4663 0.75 0.278002
Target:  5'- gUCGGCCGCGGCggCGGCGgcccCCGUGUCa -3'
miRNA:   3'- -GGUCGGCGUCGa-GCCGCa---GGUGCAGg -5'
23742 5' -59.8 NC_005261.1 + 4848 0.74 0.339756
Target:  5'- uCCGcGCCGCAGCcucaagggCGGCGgCCACGacggCCg -3'
miRNA:   3'- -GGU-CGGCGUCGa-------GCCGCaGGUGCa---GG- -5'
23742 5' -59.8 NC_005261.1 + 4888 0.74 0.308384
Target:  5'- cUCAGCCGCGGCcgccucggcuUCGGCGgcggcugccuccgCCGCGgCCg -3'
miRNA:   3'- -GGUCGGCGUCG----------AGCCGCa------------GGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 4944 0.73 0.386151
Target:  5'- cCCGcGCCGCGGCccaGGCGcCCccggccgcgGCGUCCu -3'
miRNA:   3'- -GGU-CGGCGUCGag-CCGCaGG---------UGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 5151 0.69 0.60616
Target:  5'- --cGCCuCGGCcCGGCGggCCGCGUCg -3'
miRNA:   3'- gguCGGcGUCGaGCCGCa-GGUGCAGg -5'
23742 5' -59.8 NC_005261.1 + 5284 0.66 0.752419
Target:  5'- gCCGGCCGCGGUgCGcGCGggucCCugGa-- -3'
miRNA:   3'- -GGUCGGCGUCGaGC-CGCa---GGugCagg -5'
23742 5' -59.8 NC_005261.1 + 5439 0.67 0.675436
Target:  5'- gCGGCCGCGGCggCGGCaacaGCGcCCc -3'
miRNA:   3'- gGUCGGCGUCGa-GCCGcaggUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 5508 0.66 0.733603
Target:  5'- -gGGCCGCGGCagCGGCGgcgaggCCGCcggCUu -3'
miRNA:   3'- ggUCGGCGUCGa-GCCGCa-----GGUGca-GG- -5'
23742 5' -59.8 NC_005261.1 + 5957 0.67 0.675436
Target:  5'- gCCGGCUGgcuggcUAGCUCGGC-UCCucugccgcGCGUCUc -3'
miRNA:   3'- -GGUCGGC------GUCGAGCCGcAGG--------UGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.