miRNA display CGI


Results 41 - 60 of 419 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23742 5' -59.8 NC_005261.1 + 10333 0.68 0.655695
Target:  5'- uUCuGCUGCaucgccaccGGCUCGGCGUuugUCACGgCCg -3'
miRNA:   3'- -GGuCGGCG---------UCGAGCCGCA---GGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 10751 0.66 0.770839
Target:  5'- cCCGGuCCuCGGcCUCGuCGUCCucguCGUCCu -3'
miRNA:   3'- -GGUC-GGcGUC-GAGCcGCAGGu---GCAGG- -5'
23742 5' -59.8 NC_005261.1 + 11921 0.79 0.160755
Target:  5'- cCCGGCCgGCGGCUgCGGCGgcCCGCG-CCg -3'
miRNA:   3'- -GGUCGG-CGUCGA-GCCGCa-GGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 12063 0.81 0.113233
Target:  5'- aCCGGCggUGCGGCagCGGCGUCCGCG-CCg -3'
miRNA:   3'- -GGUCG--GCGUCGa-GCCGCAGGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 12347 0.69 0.586425
Target:  5'- gCGGCCGCcGCcgCGGCGgcaaCCggcGCGUCUu -3'
miRNA:   3'- gGUCGGCGuCGa-GCCGCa---GG---UGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 12422 0.67 0.695044
Target:  5'- uCCAGggGCGGCggagggcuugCGGCGUcggCCGCGUCg -3'
miRNA:   3'- -GGUCggCGUCGa---------GCCGCA---GGUGCAGg -5'
23742 5' -59.8 NC_005261.1 + 12653 0.66 0.761683
Target:  5'- -gGGCCGC-GC-CGGCGcgacaUCguCGUCCu -3'
miRNA:   3'- ggUCGGCGuCGaGCCGC-----AGguGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 14159 0.68 0.665578
Target:  5'- uCCAGCCGC-GaaCGGCG--CGCGUCUc -3'
miRNA:   3'- -GGUCGGCGuCgaGCCGCagGUGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 14360 0.68 0.616059
Target:  5'- gCAGCCGCGGCcggGGCGg-CGCGguggCCc -3'
miRNA:   3'- gGUCGGCGUCGag-CCGCagGUGCa---GG- -5'
23742 5' -59.8 NC_005261.1 + 14530 0.69 0.566813
Target:  5'- cCCGGCgguggCGCGGCcgccCGGCGaCCACG-CCu -3'
miRNA:   3'- -GGUCG-----GCGUCGa---GCCGCaGGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 14740 0.68 0.655695
Target:  5'- aCGGUgGCAGgggcgaUCGGCG-CCGCG-CCg -3'
miRNA:   3'- gGUCGgCGUCg-----AGCCGCaGGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 15170 0.66 0.743057
Target:  5'- -gGGCguaGCGGCggCGGCGcCCGCGggaaacgCCg -3'
miRNA:   3'- ggUCGg--CGUCGa-GCCGCaGGUGCa------GG- -5'
23742 5' -59.8 NC_005261.1 + 15367 0.73 0.347201
Target:  5'- cCCGGCgGC-GCUCGGCGcCCuCGgcgCCg -3'
miRNA:   3'- -GGUCGgCGuCGAGCCGCaGGuGCa--GG- -5'
23742 5' -59.8 NC_005261.1 + 16203 0.73 0.351724
Target:  5'- -gGGCCGCgugauggccucgaGGCUCGGCcagcccucggggcgGUCgACGUCCg -3'
miRNA:   3'- ggUCGGCG-------------UCGAGCCG--------------CAGgUGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 16762 0.7 0.547374
Target:  5'- aCCAGCCcCAGCUCGuCGUCCGUGg-- -3'
miRNA:   3'- -GGUCGGcGUCGAGCcGCAGGUGCagg -5'
23742 5' -59.8 NC_005261.1 + 18070 0.69 0.60023
Target:  5'- uCCAgGCC-CAGCUcugCGGCGcucacguugccccacUCCACGUCg -3'
miRNA:   3'- -GGU-CGGcGUCGA---GCCGC---------------AGGUGCAGg -5'
23742 5' -59.8 NC_005261.1 + 18135 0.67 0.714455
Target:  5'- gCAGCCGCAggcccagucGCcgaUGGCGUCCuCcUCCg -3'
miRNA:   3'- gGUCGGCGU---------CGa--GCCGCAGGuGcAGG- -5'
23742 5' -59.8 NC_005261.1 + 19342 0.67 0.695044
Target:  5'- aCguGCCaGCAGCUCGGgGgaguucgucUCCAgGgugCCa -3'
miRNA:   3'- -GguCGG-CGUCGAGCCgC---------AGGUgCa--GG- -5'
23742 5' -59.8 NC_005261.1 + 19382 0.66 0.748686
Target:  5'- gCCAgGCCGUaguagcggGGCUCGGUGaucggcccgugugCCGCG-CCg -3'
miRNA:   3'- -GGU-CGGCG--------UCGAGCCGCa------------GGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 19835 0.69 0.60616
Target:  5'- uUCAGCgCGC-GCgCGGCGUCCuCGgcuUCCu -3'
miRNA:   3'- -GGUCG-GCGuCGaGCCGCAGGuGC---AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.