miRNA display CGI


Results 61 - 80 of 419 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23742 5' -59.8 NC_005261.1 + 19998 0.68 0.655695
Target:  5'- cCCGGCCGCGGCcccugaccCGcaccCGUCCGCGgUCa -3'
miRNA:   3'- -GGUCGGCGUCGa-------GCc---GCAGGUGC-AGg -5'
23742 5' -59.8 NC_005261.1 + 20236 0.71 0.472155
Target:  5'- gCCAGCCGCuccGC-CGcGCGcUCCAUGggcgCCg -3'
miRNA:   3'- -GGUCGGCGu--CGaGC-CGC-AGGUGCa---GG- -5'
23742 5' -59.8 NC_005261.1 + 20720 0.67 0.675436
Target:  5'- uCgGGCCGCgcuggGGCUCGGCcguUUCACGUg- -3'
miRNA:   3'- -GgUCGGCG-----UCGAGCCGc--AGGUGCAgg -5'
23742 5' -59.8 NC_005261.1 + 21217 0.67 0.675436
Target:  5'- cCCGGCCGCGa--CGGCGggCC-CGUCg -3'
miRNA:   3'- -GGUCGGCGUcgaGCCGCa-GGuGCAGg -5'
23742 5' -59.8 NC_005261.1 + 21680 0.68 0.665578
Target:  5'- uCCGGCUGgGGCUCGaGCGcgUCGCGg-- -3'
miRNA:   3'- -GGUCGGCgUCGAGC-CGCa-GGUGCagg -5'
23742 5' -59.8 NC_005261.1 + 22742 0.67 0.685261
Target:  5'- gUCGGgCGCGGggCGGCGgcggCCcacGCGUCUg -3'
miRNA:   3'- -GGUCgGCGUCgaGCCGCa---GG---UGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 22823 0.67 0.685261
Target:  5'- gCCGccGCCGCcguuggcgccgGGCUCGGggaagaacacguCGUCCucgcCGUCCg -3'
miRNA:   3'- -GGU--CGGCG-----------UCGAGCC------------GCAGGu---GCAGG- -5'
23742 5' -59.8 NC_005261.1 + 23048 0.66 0.769928
Target:  5'- aCGGCgGCAGCacccucagcuucuUCGuCGUCCucguaguCGUCCu -3'
miRNA:   3'- gGUCGgCGUCG-------------AGCcGCAGGu------GCAGG- -5'
23742 5' -59.8 NC_005261.1 + 24427 0.67 0.67937
Target:  5'- cUCGGuuGCGGUccgCGGCGauggacgaggugugcUCCGCGcUCCu -3'
miRNA:   3'- -GGUCggCGUCGa--GCCGC---------------AGGUGC-AGG- -5'
23742 5' -59.8 NC_005261.1 + 25742 0.66 0.752419
Target:  5'- aCCgGGCCGC-GCUCGGCGaUCgAuuUGcCCa -3'
miRNA:   3'- -GG-UCGGCGuCGAGCCGC-AGgU--GCaGG- -5'
23742 5' -59.8 NC_005261.1 + 28290 0.7 0.500739
Target:  5'- gCGGCCGCGGUcgucuccuucguucgCGGCGcCCGCGcUCUc -3'
miRNA:   3'- gGUCGGCGUCGa--------------GCCGCaGGUGC-AGG- -5'
23742 5' -59.8 NC_005261.1 + 28779 0.7 0.537732
Target:  5'- -gGGCCGCGGCgcgGGCGcUCGCGgCCg -3'
miRNA:   3'- ggUCGGCGUCGag-CCGCaGGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 28835 0.73 0.378134
Target:  5'- gCGGCCGCGGCUgaGGCGgCCGuCGUggCCg -3'
miRNA:   3'- gGUCGGCGUCGAg-CCGCaGGU-GCA--GG- -5'
23742 5' -59.8 NC_005261.1 + 29332 0.68 0.665578
Target:  5'- cCCGGCCGCGuGCgcuUCGGCGg-CGCGg-- -3'
miRNA:   3'- -GGUCGGCGU-CG---AGCCGCagGUGCagg -5'
23742 5' -59.8 NC_005261.1 + 29404 0.73 0.347201
Target:  5'- gCGGCCGCGcGCUacgCGGCGgCCGCGgggCCc -3'
miRNA:   3'- gGUCGGCGU-CGA---GCCGCaGGUGCa--GG- -5'
23742 5' -59.8 NC_005261.1 + 29803 0.68 0.665578
Target:  5'- gCCGGCgccgGCGGCgcgGGCGcCCGCG-CCg -3'
miRNA:   3'- -GGUCGg---CGUCGag-CCGCaGGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 29860 0.7 0.52815
Target:  5'- gCCGGCCGCgcGGCgcCGGCG-CCGCuG-CCg -3'
miRNA:   3'- -GGUCGGCG--UCGa-GCCGCaGGUG-CaGG- -5'
23742 5' -59.8 NC_005261.1 + 30029 0.69 0.586425
Target:  5'- cUCGGCUGCAGCgggccgCGGCcugccggCCGCGgCCu -3'
miRNA:   3'- -GGUCGGCGUCGa-----GCCGca-----GGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 30195 0.66 0.752419
Target:  5'- gCGGCCGCcGCgcuggaGGCGgCCGCG-CUg -3'
miRNA:   3'- gGUCGGCGuCGag----CCGCaGGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 30332 0.67 0.685261
Target:  5'- gCCGG-CGCGGCU-GGCGgCCGCGcUCg -3'
miRNA:   3'- -GGUCgGCGUCGAgCCGCaGGUGC-AGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.