miRNA display CGI


Results 81 - 100 of 419 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23742 5' -59.8 NC_005261.1 + 30782 0.69 0.59628
Target:  5'- cCCGGCCGCGGCggUGGagGUgCugGggCCg -3'
miRNA:   3'- -GGUCGGCGUCGa-GCCg-CAgGugCa-GG- -5'
23742 5' -59.8 NC_005261.1 + 31024 0.68 0.655695
Target:  5'- gCCGGCCaaaAGC-CGGCGcgccgCCGgGUCCc -3'
miRNA:   3'- -GGUCGGcg-UCGaGCCGCa----GGUgCAGG- -5'
23742 5' -59.8 NC_005261.1 + 31337 0.68 0.645793
Target:  5'- gCCAGCgCGCcGCUgCGGCGg-CGCGUggCCu -3'
miRNA:   3'- -GGUCG-GCGuCGA-GCCGCagGUGCA--GG- -5'
23742 5' -59.8 NC_005261.1 + 31678 0.7 0.52815
Target:  5'- gCUGGCCGCGGCgcggCGGCGgcugaucgugaUCgACG-CCg -3'
miRNA:   3'- -GGUCGGCGUCGa---GCCGC-----------AGgUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 31926 0.66 0.761683
Target:  5'- --cGCCGCcGCUgGGCucugCCGCGgcgCCa -3'
miRNA:   3'- gguCGGCGuCGAgCCGca--GGUGCa--GG- -5'
23742 5' -59.8 NC_005261.1 + 32129 0.7 0.52815
Target:  5'- aCCGcGCCGCcaaccgcugggGGCUCGGCGcgCCGCugcggCCg -3'
miRNA:   3'- -GGU-CGGCG-----------UCGAGCCGCa-GGUGca---GG- -5'
23742 5' -59.8 NC_005261.1 + 32223 0.72 0.402519
Target:  5'- gCCGGCCGCGGCggUGGCcuUCUGCGcggCCg -3'
miRNA:   3'- -GGUCGGCGUCGa-GCCGc-AGGUGCa--GG- -5'
23742 5' -59.8 NC_005261.1 + 32323 0.72 0.39428
Target:  5'- gCGGCCGCGGCgccCGGCGUggCCugGg-- -3'
miRNA:   3'- gGUCGGCGUCGa--GCCGCA--GGugCagg -5'
23742 5' -59.8 NC_005261.1 + 32382 0.75 0.271722
Target:  5'- gCAGgCGCGGCgcggCGGCGUCCcggagcGCGUgCCg -3'
miRNA:   3'- gGUCgGCGUCGa---GCCGCAGG------UGCA-GG- -5'
23742 5' -59.8 NC_005261.1 + 32493 0.71 0.46311
Target:  5'- gCCGGCgacgGCGGCaUCGGCGgggggUCCGCG-CCg -3'
miRNA:   3'- -GGUCGg---CGUCG-AGCCGC-----AGGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 32543 0.79 0.166391
Target:  5'- cCCGGCCGCGGCgcgggcCGGCGcgcguggaagugcucUCCuCGUCCg -3'
miRNA:   3'- -GGUCGGCGUCGa-----GCCGC---------------AGGuGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 32593 0.67 0.695044
Target:  5'- uCCu-CCGCGuccucCUCGuCGUCCGCGUCCu -3'
miRNA:   3'- -GGucGGCGUc----GAGCcGCAGGUGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 33261 0.67 0.685261
Target:  5'- gCCGGCCGUcg--CGGCccccGUCCcCGUCCc -3'
miRNA:   3'- -GGUCGGCGucgaGCCG----CAGGuGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 35056 0.73 0.370229
Target:  5'- gCGGCCGC-GCggCGGCGgucUCCGCGcCCc -3'
miRNA:   3'- gGUCGGCGuCGa-GCCGC---AGGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 35119 0.69 0.566813
Target:  5'- cCCAGCCGCcGg-CGGCGUCgCACc-CCg -3'
miRNA:   3'- -GGUCGGCGuCgaGCCGCAG-GUGcaGG- -5'
23742 5' -59.8 NC_005261.1 + 35459 0.7 0.52815
Target:  5'- uCUAGgCGCGGCgcgCGcGCGUCCcgGgGUCCc -3'
miRNA:   3'- -GGUCgGCGUCGa--GC-CGCAGG--UgCAGG- -5'
23742 5' -59.8 NC_005261.1 + 35676 0.67 0.724066
Target:  5'- gCCGGCCGCAcccccGC-CGGCGagCCcCGgugggCCg -3'
miRNA:   3'- -GGUCGGCGU-----CGaGCCGCa-GGuGCa----GG- -5'
23742 5' -59.8 NC_005261.1 + 35754 0.67 0.675436
Target:  5'- gCCAGCCGCgaaggcGGCUCGgGCcgagacaggagGcCCGCGggcgCCa -3'
miRNA:   3'- -GGUCGGCG------UCGAGC-CG-----------CaGGUGCa---GG- -5'
23742 5' -59.8 NC_005261.1 + 35906 0.7 0.537732
Target:  5'- cCCcGCCGCGGCagcgCGGCc-CCGCG-CCg -3'
miRNA:   3'- -GGuCGGCGUCGa---GCCGcaGGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 35934 0.66 0.733603
Target:  5'- gCAGCC-CAGCg-GGCGcCCAgGcCCg -3'
miRNA:   3'- gGUCGGcGUCGagCCGCaGGUgCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.