miRNA display CGI


Results 1 - 20 of 419 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23742 5' -59.8 NC_005261.1 + 138064 0.77 0.205037
Target:  5'- gCGGCgGCGGCggCGGCagcgGUCCugGUCCc -3'
miRNA:   3'- gGUCGgCGUCGa-GCCG----CAGGugCAGG- -5'
23742 5' -59.8 NC_005261.1 + 137988 0.7 0.499805
Target:  5'- gCGGCgGCGGCUgCGGCGgcggCUGCGgcggCCc -3'
miRNA:   3'- gGUCGgCGUCGA-GCCGCa---GGUGCa---GG- -5'
23742 5' -59.8 NC_005261.1 + 137933 0.69 0.586425
Target:  5'- cCCGGCUGCGGCggcggcugCGGCGgcggCUGCGg-- -3'
miRNA:   3'- -GGUCGGCGUCGa-------GCCGCa---GGUGCagg -5'
23742 5' -59.8 NC_005261.1 + 136923 0.74 0.325215
Target:  5'- gCGGCCGCGGCgcaugUGGUGguacaugggCCGCGUCg -3'
miRNA:   3'- gGUCGGCGUCGa----GCCGCa--------GGUGCAGg -5'
23742 5' -59.8 NC_005261.1 + 136615 0.69 0.557069
Target:  5'- gCGGCgCGCGcGCgccgagggCGGCGggaaggCCugGUCCg -3'
miRNA:   3'- gGUCG-GCGU-CGa-------GCCGCa-----GGugCAGG- -5'
23742 5' -59.8 NC_005261.1 + 136491 0.75 0.265556
Target:  5'- gCAGCgaGCAGCUCGGCGcCgACG-CCu -3'
miRNA:   3'- gGUCGg-CGUCGAGCCGCaGgUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 135754 0.66 0.743057
Target:  5'- cUCAGCCGCGcggugcGCUcCGGCGcagagCGCGUgCCg -3'
miRNA:   3'- -GGUCGGCGU------CGA-GCCGCag---GUGCA-GG- -5'
23742 5' -59.8 NC_005261.1 + 135097 0.69 0.557069
Target:  5'- cCCGGCgGCggAGCgcgaGGCGgaccCCGCGUCUc -3'
miRNA:   3'- -GGUCGgCG--UCGag--CCGCa---GGUGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 135028 0.66 0.752419
Target:  5'- gCGGCCGCGGC--GGCGaggCCgACG-CCu -3'
miRNA:   3'- gGUCGGCGUCGagCCGCa--GG-UGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 134726 0.67 0.685261
Target:  5'- cCCGGCCGggaccCGGaCUCGGCGacggcacCCGCGaCCc -3'
miRNA:   3'- -GGUCGGC-----GUC-GAGCCGCa------GGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 134224 0.72 0.39428
Target:  5'- gCGGCCgGCAGCgUCGGCGUggcgcaCGCGcCCu -3'
miRNA:   3'- gGUCGG-CGUCG-AGCCGCAg-----GUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 134195 0.7 0.537732
Target:  5'- gCCuGgCGCGGCUCGGCG-CgCGgGUCg -3'
miRNA:   3'- -GGuCgGCGUCGAGCCGCaG-GUgCAGg -5'
23742 5' -59.8 NC_005261.1 + 133338 0.66 0.770839
Target:  5'- gCCGGCaCGCGcGCgCGGCGcugCCGCG-Ca -3'
miRNA:   3'- -GGUCG-GCGU-CGaGCCGCa--GGUGCaGg -5'
23742 5' -59.8 NC_005261.1 + 133100 0.67 0.724066
Target:  5'- -aGGCCGCcgucaaccgcgcGGCcuuccaCGGCGUgCGCGUCUc -3'
miRNA:   3'- ggUCGGCG------------UCGa-----GCCGCAgGUGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 130914 0.67 0.704779
Target:  5'- aCGGUCGCcGCUuacCGGCGgcUCUACG-CCa -3'
miRNA:   3'- gGUCGGCGuCGA---GCCGC--AGGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 130432 0.67 0.695044
Target:  5'- cCCGGCCGCGGCgccuacgUGGUcUCCuACGaCUg -3'
miRNA:   3'- -GGUCGGCGUCGa------GCCGcAGG-UGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 130338 0.72 0.42273
Target:  5'- cCCGGCCGC-GCUCGGgGacgcgcugcggguccUCUACG-CCa -3'
miRNA:   3'- -GGUCGGCGuCGAGCCgC---------------AGGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 130247 0.69 0.566813
Target:  5'- gCCGcGCCaGCGGCUCguacugcggGGCGUCCcgcGCGcCCc -3'
miRNA:   3'- -GGU-CGG-CGUCGAG---------CCGCAGG---UGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 129885 0.66 0.752419
Target:  5'- cUCGGCCGCcauGCggaUGGCcugGUCCACcaugcuGUCCg -3'
miRNA:   3'- -GGUCGGCGu--CGa--GCCG---CAGGUG------CAGG- -5'
23742 5' -59.8 NC_005261.1 + 129725 0.73 0.386151
Target:  5'- gCCGGCUGCAGCggcagggCGGCGgggCC-CGgCCu -3'
miRNA:   3'- -GGUCGGCGUCGa------GCCGCa--GGuGCaGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.