miRNA display CGI


Results 21 - 40 of 419 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23742 5' -59.8 NC_005261.1 + 127782 0.68 0.645793
Target:  5'- cCCGGCUGCucgagcggcgGGC-CGGCG-CCGCGgcggcgggCCg -3'
miRNA:   3'- -GGUCGGCG----------UCGaGCCGCaGGUGCa-------GG- -5'
23742 5' -59.8 NC_005261.1 + 127507 0.68 0.635882
Target:  5'- gCCGGgCGUA-CUCGGCGgCCACGagCg -3'
miRNA:   3'- -GGUCgGCGUcGAGCCGCaGGUGCagG- -5'
23742 5' -59.8 NC_005261.1 + 126797 0.69 0.557069
Target:  5'- gUCuGCCgagaGCAGCgCGGCGUCUGCGUa- -3'
miRNA:   3'- -GGuCGG----CGUCGaGCCGCAGGUGCAgg -5'
23742 5' -59.8 NC_005261.1 + 126697 0.66 0.769928
Target:  5'- gCCGGCggugcgggaaGCGGCUgguucgcgugCGcguucaaguccaaGCGUCCGCGUCCc -3'
miRNA:   3'- -GGUCGg---------CGUCGA----------GC-------------CGCAGGUGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 126499 0.7 0.518631
Target:  5'- aCCAgcuGCCGCAGgcggucugcCUgGGCGcCCGCGcCCg -3'
miRNA:   3'- -GGU---CGGCGUC---------GAgCCGCaGGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 126454 0.68 0.624977
Target:  5'- gCCAGCCGCGccagcgcGCUCGccucGCGguaguaCCGCG-CCg -3'
miRNA:   3'- -GGUCGGCGU-------CGAGC----CGCa-----GGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 126248 0.78 0.186176
Target:  5'- gCC-GCCGCAGCUCcgccGCGUCCAagaagcCGUCCu -3'
miRNA:   3'- -GGuCGGCGUCGAGc---CGCAGGU------GCAGG- -5'
23742 5' -59.8 NC_005261.1 + 126067 0.76 0.253564
Target:  5'- gCCAGCCGCccgccGGcCUCGGCGggCGCGcCCa -3'
miRNA:   3'- -GGUCGGCG-----UC-GAGCCGCagGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 125941 0.66 0.761683
Target:  5'- gUAGCCGCuGGCgCGGgGUCgCACGg-- -3'
miRNA:   3'- gGUCGGCG-UCGaGCCgCAG-GUGCagg -5'
23742 5' -59.8 NC_005261.1 + 125714 0.67 0.724066
Target:  5'- aCGGCCGCcgcgGGCUCGGCuGgggCCGCc--- -3'
miRNA:   3'- gGUCGGCG----UCGAGCCG-Ca--GGUGcagg -5'
23742 5' -59.8 NC_005261.1 + 125432 0.67 0.681335
Target:  5'- -aGGCCGCccaucccuagCGGCGUCCauaGCGUCUa -3'
miRNA:   3'- ggUCGGCGucga------GCCGCAGG---UGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 125305 0.79 0.168447
Target:  5'- gCCGGacccgcgggcgcuCCGCGGcCUCGGCGUCCgcagcgcgcaggGCGUCCa -3'
miRNA:   3'- -GGUC-------------GGCGUC-GAGCCGCAGG------------UGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 124450 0.68 0.655695
Target:  5'- aCCAGCCGgGGCcgggugcccUCaggGGCGcCCACGUa- -3'
miRNA:   3'- -GGUCGGCgUCG---------AG---CCGCaGGUGCAgg -5'
23742 5' -59.8 NC_005261.1 + 124071 0.72 0.39428
Target:  5'- cUCGGCCgacuGCAGCcCGGCGcCCGCGUa- -3'
miRNA:   3'- -GGUCGG----CGUCGaGCCGCaGGUGCAgg -5'
23742 5' -59.8 NC_005261.1 + 123497 0.71 0.490506
Target:  5'- aCCGGgCGCAccagCGGCaGUgCCGCGUCCg -3'
miRNA:   3'- -GGUCgGCGUcga-GCCG-CA-GGUGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 123441 0.72 0.427878
Target:  5'- gCAGCCGCAGCUCGcGCaugacgccgUCGCGggCCu -3'
miRNA:   3'- gGUCGGCGUCGAGC-CGca-------GGUGCa-GG- -5'
23742 5' -59.8 NC_005261.1 + 123008 0.84 0.07708
Target:  5'- aCGGCCGCGGCcgUGGCGUCCGCGagCg -3'
miRNA:   3'- gGUCGGCGUCGa-GCCGCAGGUGCagG- -5'
23742 5' -59.8 NC_005261.1 + 122852 0.68 0.645793
Target:  5'- uCCAGCCgGUA-CUCGuCGUCgGCGUCUu -3'
miRNA:   3'- -GGUCGG-CGUcGAGCcGCAGgUGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 122714 0.69 0.557069
Target:  5'- gCCGGCCGC-GCcgUCGaUGUUCACGUCg -3'
miRNA:   3'- -GGUCGGCGuCG--AGCcGCAGGUGCAGg -5'
23742 5' -59.8 NC_005261.1 + 122359 0.79 0.153002
Target:  5'- gCGGCCGCGGCUCGcGCGgccccaCCGCGgCCu -3'
miRNA:   3'- gGUCGGCGUCGAGC-CGCa-----GGUGCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.