miRNA display CGI


Results 41 - 60 of 419 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23742 5' -59.8 NC_005261.1 + 121950 0.7 0.547374
Target:  5'- gCCAGCUugaacCAGCUCGcCGUgCCGCGcUCCa -3'
miRNA:   3'- -GGUCGGc----GUCGAGCcGCA-GGUGC-AGG- -5'
23742 5' -59.8 NC_005261.1 + 121783 0.66 0.770839
Target:  5'- -uGGCCGCGGC-CGGCGggCugGg-- -3'
miRNA:   3'- ggUCGGCGUCGaGCCGCagGugCagg -5'
23742 5' -59.8 NC_005261.1 + 121639 0.74 0.311143
Target:  5'- gCGGCCGCcGC-CGGCGagcgcgggcugUCCGCGUCg -3'
miRNA:   3'- gGUCGGCGuCGaGCCGC-----------AGGUGCAGg -5'
23742 5' -59.8 NC_005261.1 + 121279 0.68 0.616059
Target:  5'- gCGGCCGCcccGGcCUCGcucuCGUCCcCGUCCc -3'
miRNA:   3'- gGUCGGCG---UC-GAGCc---GCAGGuGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 121087 0.66 0.770839
Target:  5'- gCGGCCGcCAGCgccuccaGGcCGUgCGgGUCCu -3'
miRNA:   3'- gGUCGGC-GUCGag-----CC-GCAgGUgCAGG- -5'
23742 5' -59.8 NC_005261.1 + 121056 0.68 0.625968
Target:  5'- gCGGuuGUGGCgcgCGGUGUgCGCGgcgCCg -3'
miRNA:   3'- gGUCggCGUCGa--GCCGCAgGUGCa--GG- -5'
23742 5' -59.8 NC_005261.1 + 120251 0.66 0.732652
Target:  5'- --cGCCGCGGCUgccacgcCGGCcGUCUACcGcCCg -3'
miRNA:   3'- gguCGGCGUCGA-------GCCG-CAGGUG-CaGG- -5'
23742 5' -59.8 NC_005261.1 + 119516 0.67 0.685261
Target:  5'- aCAGCaCGCGGCccCGGUccCCGCGgCCg -3'
miRNA:   3'- gGUCG-GCGUCGa-GCCGcaGGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 119126 0.69 0.59628
Target:  5'- -aGGCCGCGGCcgCGGCGcggCCAucuCGgaUCCg -3'
miRNA:   3'- ggUCGGCGUCGa-GCCGCa--GGU---GC--AGG- -5'
23742 5' -59.8 NC_005261.1 + 118948 0.67 0.714455
Target:  5'- gCUGGCCGCGGCgcacgUGGCcaagGUCCugcACG-CCg -3'
miRNA:   3'- -GGUCGGCGUCGa----GCCG----CAGG---UGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 118230 0.73 0.369445
Target:  5'- aCGGCCGCGGCcgCGGCcuacgccGUCUGCGgcgugCCg -3'
miRNA:   3'- gGUCGGCGUCGa-GCCG-------CAGGUGCa----GG- -5'
23742 5' -59.8 NC_005261.1 + 118062 0.71 0.481288
Target:  5'- gCGGCCGCGGCagCGGCcgcagCCGCGcUCg -3'
miRNA:   3'- gGUCGGCGUCGa-GCCGca---GGUGC-AGg -5'
23742 5' -59.8 NC_005261.1 + 117733 0.66 0.733603
Target:  5'- gCGGCCGCGcGCU-GGCG-CCGcCGcCCc -3'
miRNA:   3'- gGUCGGCGU-CGAgCCGCaGGU-GCaGG- -5'
23742 5' -59.8 NC_005261.1 + 116922 0.66 0.752419
Target:  5'- aCAGCCGCcgcgGGCUgcUGGaCGccuUCCGCG-CCa -3'
miRNA:   3'- gGUCGGCG----UCGA--GCC-GC---AGGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 116513 0.67 0.71349
Target:  5'- --cGCCGCcGCggCGGCGcgaggcccgccgcUCCGCGcCCg -3'
miRNA:   3'- gguCGGCGuCGa-GCCGC-------------AGGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 116147 0.69 0.59628
Target:  5'- gCAGCgagaggaaGCAGCgcgCGGuCGcggCCGCGUCCc -3'
miRNA:   3'- gGUCGg-------CGUCGa--GCC-GCa--GGUGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 115904 0.69 0.586425
Target:  5'- cCCcGCCGUcgucAGCgcCGGcCG-CCGCGUCCg -3'
miRNA:   3'- -GGuCGGCG----UCGa-GCC-GCaGGUGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 115619 0.69 0.604183
Target:  5'- gCCAGCacgucgcggcagCGCAGCgUCGGgGggaagaggggcgCCGCGUCUa -3'
miRNA:   3'- -GGUCG------------GCGUCG-AGCCgCa-----------GGUGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 115489 0.67 0.685261
Target:  5'- cUCGGCCGCGGC--GGCGcgCCGCaGcCCc -3'
miRNA:   3'- -GGUCGGCGUCGagCCGCa-GGUG-CaGG- -5'
23742 5' -59.8 NC_005261.1 + 115415 0.66 0.770839
Target:  5'- gCgGGCgGCAGC-CGGgG-CCGCGgCCc -3'
miRNA:   3'- -GgUCGgCGUCGaGCCgCaGGUGCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.