miRNA display CGI


Results 61 - 80 of 419 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23742 5' -59.8 NC_005261.1 + 115296 0.74 0.332427
Target:  5'- gCAGCCGCAacGCgUCGGCG--CACGUCUg -3'
miRNA:   3'- gGUCGGCGU--CG-AGCCGCagGUGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 115199 0.7 0.518631
Target:  5'- aCGGCC-CAGCgccCGuGCGUCCGCGgcgcgaucgugUCCa -3'
miRNA:   3'- gGUCGGcGUCGa--GC-CGCAGGUGC-----------AGG- -5'
23742 5' -59.8 NC_005261.1 + 114995 0.68 0.655695
Target:  5'- gCCGGCCGCcGCggcccCGGCc-CCGCGgaggCCu -3'
miRNA:   3'- -GGUCGGCGuCGa----GCCGcaGGUGCa---GG- -5'
23742 5' -59.8 NC_005261.1 + 111667 0.7 0.499805
Target:  5'- cCCGcGCCGCGGUggCGGCGU--ACGUCg -3'
miRNA:   3'- -GGU-CGGCGUCGa-GCCGCAggUGCAGg -5'
23742 5' -59.8 NC_005261.1 + 111032 0.67 0.714455
Target:  5'- aCCuGCCGCAGCga-GCG-CUACaaGUCCu -3'
miRNA:   3'- -GGuCGGCGUCGagcCGCaGGUG--CAGG- -5'
23742 5' -59.8 NC_005261.1 + 109790 0.75 0.271722
Target:  5'- cCCGGCCGCuGCUgcgacggcCGGCG-CCGCuUCCg -3'
miRNA:   3'- -GGUCGGCGuCGA--------GCCGCaGGUGcAGG- -5'
23742 5' -59.8 NC_005261.1 + 109334 0.79 0.156835
Target:  5'- gCGGCCGCgGGgUCGGCGgCCGCGUCg -3'
miRNA:   3'- gGUCGGCG-UCgAGCCGCaGGUGCAGg -5'
23742 5' -59.8 NC_005261.1 + 109067 0.71 0.450602
Target:  5'- cCCAGCgGCGcCUCGGCGaucaugccguuggCCAgGUCCc -3'
miRNA:   3'- -GGUCGgCGUcGAGCCGCa------------GGUgCAGG- -5'
23742 5' -59.8 NC_005261.1 + 108738 0.87 0.046932
Target:  5'- gCCAGCgGCGGCgccgCGGCGUCCGCGgcgcgCCg -3'
miRNA:   3'- -GGUCGgCGUCGa---GCCGCAGGUGCa----GG- -5'
23742 5' -59.8 NC_005261.1 + 108660 0.74 0.31812
Target:  5'- gCCAGCCcCGGCgUC-GCGUCCucguCGUCCg -3'
miRNA:   3'- -GGUCGGcGUCG-AGcCGCAGGu---GCAGG- -5'
23742 5' -59.8 NC_005261.1 + 108445 0.75 0.265556
Target:  5'- cCCGGCCgaGCAGCgcgucgUCGGCGaggaucUCCGCGUCg -3'
miRNA:   3'- -GGUCGG--CGUCG------AGCCGC------AGGUGCAGg -5'
23742 5' -59.8 NC_005261.1 + 108321 0.67 0.675436
Target:  5'- aCGGCCGCcgcguGCUCcGCGacCCGCG-CCa -3'
miRNA:   3'- gGUCGGCGu----CGAGcCGCa-GGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 108257 0.71 0.445299
Target:  5'- cCCcGCCGCGGC-CaGCGUcuccacggCCugGUCCg -3'
miRNA:   3'- -GGuCGGCGUCGaGcCGCA--------GGugCAGG- -5'
23742 5' -59.8 NC_005261.1 + 108184 0.73 0.370229
Target:  5'- gCGGCCGCGGCUCcgGGCGcgagagCUGCG-CCa -3'
miRNA:   3'- gGUCGGCGUCGAG--CCGCa-----GGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 108013 0.7 0.547374
Target:  5'- gCAGCCcCAGCagCGGCag-CACGUCCg -3'
miRNA:   3'- gGUCGGcGUCGa-GCCGcagGUGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 107867 0.71 0.480371
Target:  5'- gCCGGCCGCccgcgcGCUCGcGCccgcggcccgcuuGUCCGCGgCCg -3'
miRNA:   3'- -GGUCGGCGu-----CGAGC-CG-------------CAGGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 107719 0.66 0.770839
Target:  5'- gCuGCCGCGGCa-GGCGgCUGCG-CCu -3'
miRNA:   3'- gGuCGGCGUCGagCCGCaGGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 107689 0.66 0.752419
Target:  5'- gCC-GCCGCGGCgggGGCGccgCCgaACGUCg -3'
miRNA:   3'- -GGuCGGCGUCGag-CCGCa--GG--UGCAGg -5'
23742 5' -59.8 NC_005261.1 + 107518 0.68 0.665578
Target:  5'- gCCGcGCCgaaggGCAGCgcgUCGGCGgccaccagCACGUCCg -3'
miRNA:   3'- -GGU-CGG-----CGUCG---AGCCGCag------GUGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 107409 0.7 0.52815
Target:  5'- cCCGGCCGCcagggccgagAGCUucgucCGGUagccGUCCACGUUg -3'
miRNA:   3'- -GGUCGGCG----------UCGA-----GCCG----CAGGUGCAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.