Results 61 - 80 of 419 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23742 | 5' | -59.8 | NC_005261.1 | + | 138064 | 0.77 | 0.205037 |
Target: 5'- gCGGCgGCGGCggCGGCagcgGUCCugGUCCc -3' miRNA: 3'- gGUCGgCGUCGa-GCCG----CAGGugCAGG- -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 81272 | 0.77 | 0.209503 |
Target: 5'- cCCGGCCGCcugcgcgagccggAGCgCGGCG-CgCACGUCCg -3' miRNA: 3'- -GGUCGGCG-------------UCGaGCCGCaG-GUGCAGG- -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 59947 | 0.76 | 0.253564 |
Target: 5'- uCCAGCCGCAGCgCGGCG--CGCGUg- -3' miRNA: 3'- -GGUCGGCGUCGaGCCGCagGUGCAgg -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 126067 | 0.76 | 0.253564 |
Target: 5'- gCCAGCCGCccgccGGcCUCGGCGggCGCGcCCa -3' miRNA: 3'- -GGUCGGCG-----UC-GAGCCGCagGUGCaGG- -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 102632 | 0.75 | 0.265556 |
Target: 5'- cUCGGCCGCGGCUU--CGUCCGCGgCCc -3' miRNA: 3'- -GGUCGGCGUCGAGccGCAGGUGCaGG- -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 136491 | 0.75 | 0.265556 |
Target: 5'- gCAGCgaGCAGCUCGGCGcCgACG-CCu -3' miRNA: 3'- gGUCGg-CGUCGAGCCGCaGgUGCaGG- -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 108445 | 0.75 | 0.265556 |
Target: 5'- cCCGGCCgaGCAGCgcgucgUCGGCGaggaucUCCGCGUCg -3' miRNA: 3'- -GGUCGG--CGUCG------AGCCGC------AGGUGCAGg -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 32382 | 0.75 | 0.271722 |
Target: 5'- gCAGgCGCGGCgcggCGGCGUCCcggagcGCGUgCCg -3' miRNA: 3'- gGUCgGCGUCGa---GCCGCAGG------UGCA-GG- -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 62996 | 0.75 | 0.271722 |
Target: 5'- uCCAGCCGgccCUCGGCGgCCGCGcCCg -3' miRNA: 3'- -GGUCGGCgucGAGCCGCaGGUGCaGG- -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 109790 | 0.75 | 0.271722 |
Target: 5'- cCCGGCCGCuGCUgcgacggcCGGCG-CCGCuUCCg -3' miRNA: 3'- -GGUCGGCGuCGA--------GCCGCaGGUGcAGG- -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 47665 | 0.76 | 0.25122 |
Target: 5'- gCCAGCCGCAGCgccgagcgcagcaCGGcCGcCCGCGgcgCCg -3' miRNA: 3'- -GGUCGGCGUCGa------------GCC-GCaGGUGCa--GG- -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 107113 | 0.76 | 0.247737 |
Target: 5'- cCCAGCCGCgccaccgcgccGGCgaCGGCGcCCACGgCCg -3' miRNA: 3'- -GGUCGGCG-----------UCGa-GCCGCaGGUGCaGG- -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 3882 | 0.77 | 0.210005 |
Target: 5'- aCGGCgCGCAGCUCGGCGagCGCGg-- -3' miRNA: 3'- gGUCG-GCGUCGAGCCGCagGUGCagg -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 1406 | 0.77 | 0.215075 |
Target: 5'- gCGGCCGCGGCggcggcgggggCGGCGcCCGCcUCCa -3' miRNA: 3'- gGUCGGCGUCGa----------GCCGCaGGUGcAGG- -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 47626 | 0.77 | 0.215075 |
Target: 5'- gCGGCCGCGGCcgcCGcGCGcaCCGCGUCCu -3' miRNA: 3'- gGUCGGCGUCGa--GC-CGCa-GGUGCAGG- -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 71063 | 0.76 | 0.236416 |
Target: 5'- gCCAGCCGCcgcgcggcgGGCggGGCGUCCGgGcCCg -3' miRNA: 3'- -GGUCGGCG---------UCGagCCGCAGGUgCaGG- -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 75209 | 0.76 | 0.236416 |
Target: 5'- gCGGCCGCGGUggCGGCG-CUGCaGUCCa -3' miRNA: 3'- gGUCGGCGUCGa-GCCGCaGGUG-CAGG- -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 105138 | 0.76 | 0.247161 |
Target: 5'- gCCGGCgcgcgcagguccuCGCGGCUcgagggCGGCGUCCACGgggCCc -3' miRNA: 3'- -GGUCG-------------GCGUCGA------GCCGCAGGUGCa--GG- -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 64403 | 0.76 | 0.247737 |
Target: 5'- gCAGCaccaGCAGCgcgUCGGCGUCCACcG-CCa -3' miRNA: 3'- gGUCGg---CGUCG---AGCCGCAGGUG-CaGG- -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 46479 | 0.76 | 0.247737 |
Target: 5'- gCAGgUGCAGCUCGGCGcccUCCGCGg-- -3' miRNA: 3'- gGUCgGCGUCGAGCCGC---AGGUGCagg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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