miRNA display CGI


Results 81 - 100 of 419 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23742 5' -59.8 NC_005261.1 + 102793 0.75 0.284398
Target:  5'- cCCGGCCGCgAGCgCGGCGcccagccgCCGCGcgCCg -3'
miRNA:   3'- -GGUCGGCG-UCGaGCCGCa-------GGUGCa-GG- -5'
23742 5' -59.8 NC_005261.1 + 52405 0.75 0.289598
Target:  5'- -aGGUCGUcgaGGCUaaaguccucgaaGGCGUCCGCGUCCa -3'
miRNA:   3'- ggUCGGCG---UCGAg-----------CCGCAGGUGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 48808 0.74 0.304282
Target:  5'- -aGGCCGU-GCgCGGCGUCCGCGacgCCg -3'
miRNA:   3'- ggUCGGCGuCGaGCCGCAGGUGCa--GG- -5'
23742 5' -59.8 NC_005261.1 + 70637 0.74 0.304282
Target:  5'- gCCAagcGCCGCGGCgcugagguUCGGCG-CCGCGgCCg -3'
miRNA:   3'- -GGU---CGGCGUCG--------AGCCGCaGGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 4888 0.74 0.308384
Target:  5'- cUCAGCCGCGGCcgccucggcuUCGGCGgcggcugccuccgCCGCGgCCg -3'
miRNA:   3'- -GGUCGGCGUCG----------AGCCGCa------------GGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 102066 0.74 0.311143
Target:  5'- aUCAGCCGCgucAGCU-GGC--CCACGUCCg -3'
miRNA:   3'- -GGUCGGCG---UCGAgCCGcaGGUGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 121639 0.74 0.311143
Target:  5'- gCGGCCGCcGC-CGGCGagcgcgggcugUCCGCGUCg -3'
miRNA:   3'- gGUCGGCGuCGaGCCGC-----------AGGUGCAGg -5'
23742 5' -59.8 NC_005261.1 + 109790 0.75 0.271722
Target:  5'- cCCGGCCGCuGCUgcgacggcCGGCG-CCGCuUCCg -3'
miRNA:   3'- -GGUCGGCGuCGA--------GCCGCaGGUGcAGG- -5'
23742 5' -59.8 NC_005261.1 + 62996 0.75 0.271722
Target:  5'- uCCAGCCGgccCUCGGCGgCCGCGcCCg -3'
miRNA:   3'- -GGUCGGCgucGAGCCGCaGGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 32382 0.75 0.271722
Target:  5'- gCAGgCGCGGCgcggCGGCGUCCcggagcGCGUgCCg -3'
miRNA:   3'- gGUCgGCGUCGa---GCCGCAGG------UGCA-GG- -5'
23742 5' -59.8 NC_005261.1 + 105138 0.76 0.247161
Target:  5'- gCCGGCgcgcgcagguccuCGCGGCUcgagggCGGCGUCCACGgggCCc -3'
miRNA:   3'- -GGUCG-------------GCGUCGA------GCCGCAGGUGCa--GG- -5'
23742 5' -59.8 NC_005261.1 + 64403 0.76 0.247737
Target:  5'- gCAGCaccaGCAGCgcgUCGGCGUCCACcG-CCa -3'
miRNA:   3'- gGUCGg---CGUCG---AGCCGCAGGUG-CaGG- -5'
23742 5' -59.8 NC_005261.1 + 46479 0.76 0.247737
Target:  5'- gCAGgUGCAGCUCGGCGcccUCCGCGg-- -3'
miRNA:   3'- gGUCgGCGUCGAGCCGC---AGGUGCagg -5'
23742 5' -59.8 NC_005261.1 + 107113 0.76 0.247737
Target:  5'- cCCAGCCGCgccaccgcgccGGCgaCGGCGcCCACGgCCg -3'
miRNA:   3'- -GGUCGGCG-----------UCGa-GCCGCaGGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 47665 0.76 0.25122
Target:  5'- gCCAGCCGCAGCgccgagcgcagcaCGGcCGcCCGCGgcgCCg -3'
miRNA:   3'- -GGUCGGCGUCGa------------GCC-GCaGGUGCa--GG- -5'
23742 5' -59.8 NC_005261.1 + 59947 0.76 0.253564
Target:  5'- uCCAGCCGCAGCgCGGCG--CGCGUg- -3'
miRNA:   3'- -GGUCGGCGUCGaGCCGCagGUGCAgg -5'
23742 5' -59.8 NC_005261.1 + 126067 0.76 0.253564
Target:  5'- gCCAGCCGCccgccGGcCUCGGCGggCGCGcCCa -3'
miRNA:   3'- -GGUCGGCG-----UC-GAGCCGCagGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 102632 0.75 0.265556
Target:  5'- cUCGGCCGCGGCUU--CGUCCGCGgCCc -3'
miRNA:   3'- -GGUCGGCGUCGAGccGCAGGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 136491 0.75 0.265556
Target:  5'- gCAGCgaGCAGCUCGGCGcCgACG-CCu -3'
miRNA:   3'- gGUCGg-CGUCGAGCCGCaGgUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 108445 0.75 0.265556
Target:  5'- cCCGGCCgaGCAGCgcgucgUCGGCGaggaucUCCGCGUCg -3'
miRNA:   3'- -GGUCGG--CGUCG------AGCCGC------AGGUGCAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.