Results 41 - 60 of 419 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23742 | 5' | -59.8 | NC_005261.1 | + | 58954 | 0.8 | 0.128472 |
Target: 5'- cUCGGCCaGCAGCgccUCGGCGcCCGCGUCg -3' miRNA: 3'- -GGUCGG-CGUCG---AGCCGCaGGUGCAGg -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 12063 | 0.81 | 0.113233 |
Target: 5'- aCCGGCggUGCGGCagCGGCGUCCGCG-CCg -3' miRNA: 3'- -GGUCG--GCGUCGa-GCCGCAGGUGCaGG- -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 58491 | 0.83 | 0.085468 |
Target: 5'- gCCGGCgCGCGGCcgcuuUUGGCGcCCGCGUCCa -3' miRNA: 3'- -GGUCG-GCGUCG-----AGCCGCaGGUGCAGG- -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 123008 | 0.84 | 0.07708 |
Target: 5'- aCGGCCGCGGCcgUGGCGUCCGCGagCg -3' miRNA: 3'- gGUCGGCGUCGa-GCCGCAGGUGCagG- -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 104542 | 0.86 | 0.052132 |
Target: 5'- aCCAGgCGCAGCUUGGCGUCCGCcagGUCg -3' miRNA: 3'- -GGUCgGCGUCGAGCCGCAGGUG---CAGg -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 103509 | 0.78 | 0.181706 |
Target: 5'- --cGCCGCGGacggCGGCGUCCGCGgcaUCCg -3' miRNA: 3'- gguCGGCGUCga--GCCGCAGGUGC---AGG- -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 126248 | 0.78 | 0.186176 |
Target: 5'- gCC-GCCGCAGCUCcgccGCGUCCAagaagcCGUCCu -3' miRNA: 3'- -GGuCGGCGUCGAGc---CGCAGGU------GCAGG- -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 46479 | 0.76 | 0.247737 |
Target: 5'- gCAGgUGCAGCUCGGCGcccUCCGCGg-- -3' miRNA: 3'- gGUCgGCGUCGAGCCGC---AGGUGCagg -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 64403 | 0.76 | 0.247737 |
Target: 5'- gCAGCaccaGCAGCgcgUCGGCGUCCACcG-CCa -3' miRNA: 3'- gGUCGg---CGUCG---AGCCGCAGGUG-CaGG- -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 105138 | 0.76 | 0.247161 |
Target: 5'- gCCGGCgcgcgcagguccuCGCGGCUcgagggCGGCGUCCACGgggCCc -3' miRNA: 3'- -GGUCG-------------GCGUCGA------GCCGCAGGUGCa--GG- -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 75209 | 0.76 | 0.236416 |
Target: 5'- gCGGCCGCGGUggCGGCG-CUGCaGUCCa -3' miRNA: 3'- gGUCGGCGUCGa-GCCGCaGGUG-CAGG- -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 71063 | 0.76 | 0.236416 |
Target: 5'- gCCAGCCGCcgcgcggcgGGCggGGCGUCCGgGcCCg -3' miRNA: 3'- -GGUCGGCG---------UCGagCCGCAGGUgCaGG- -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 47626 | 0.77 | 0.215075 |
Target: 5'- gCGGCCGCGGCcgcCGcGCGcaCCGCGUCCu -3' miRNA: 3'- gGUCGGCGUCGa--GC-CGCa-GGUGCAGG- -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 1406 | 0.77 | 0.215075 |
Target: 5'- gCGGCCGCGGCggcggcgggggCGGCGcCCGCcUCCa -3' miRNA: 3'- gGUCGGCGUCGa----------GCCGCaGGUGcAGG- -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 3882 | 0.77 | 0.210005 |
Target: 5'- aCGGCgCGCAGCUCGGCGagCGCGg-- -3' miRNA: 3'- gGUCG-GCGUCGAGCCGCagGUGCagg -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 81272 | 0.77 | 0.209503 |
Target: 5'- cCCGGCCGCcugcgcgagccggAGCgCGGCG-CgCACGUCCg -3' miRNA: 3'- -GGUCGGCG-------------UCGaGCCGCaG-GUGCAGG- -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 138064 | 0.77 | 0.205037 |
Target: 5'- gCGGCgGCGGCggCGGCagcgGUCCugGUCCc -3' miRNA: 3'- gGUCGgCGUCGa-GCCG----CAGGugCAGG- -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 393 | 0.77 | 0.205037 |
Target: 5'- gCGGCgGCGGCggCGGCagcgGUCCugGUCCc -3' miRNA: 3'- gGUCGgCGUCGa-GCCG----CAGGugCAGG- -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 106529 | 0.78 | 0.195408 |
Target: 5'- gCCAGCacCGCcucCUCGGCGgcggCCGCGUCCg -3' miRNA: 3'- -GGUCG--GCGuc-GAGCCGCa---GGUGCAGG- -5' |
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23742 | 5' | -59.8 | NC_005261.1 | + | 105720 | 0.78 | 0.190743 |
Target: 5'- gUCuGCCGCGGCUgccacaCGGCGUCCACGa-- -3' miRNA: 3'- -GGuCGGCGUCGA------GCCGCAGGUGCagg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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