miRNA display CGI


Results 1 - 20 of 345 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23743 3' -62.2 NC_005261.1 + 71459 0.66 0.668896
Target:  5'- gCCUCCcggagcaucaggaagGCcUCCCGguGcGCGGCGGCc -3'
miRNA:   3'- gGGAGGa--------------CGcGGGGCguC-UGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 30173 0.66 0.667925
Target:  5'- gCCCgccgCgCUGCGCgCCG-AGGCGGCcGCc -3'
miRNA:   3'- -GGGa---G-GACGCGgGGCgUCUGCUGcCG- -5'
23743 3' -62.2 NC_005261.1 + 91474 0.66 0.667925
Target:  5'- gCCUCCcagcgGCGCCgCCGCGGcCGccgcccgccccGCGcGCc -3'
miRNA:   3'- gGGAGGa----CGCGG-GGCGUCuGC-----------UGC-CG- -5'
23743 3' -62.2 NC_005261.1 + 34719 0.66 0.667925
Target:  5'- gCCUCagcggucgGCGCCCC-CuGGCGGCcGCg -3'
miRNA:   3'- gGGAGga------CGCGGGGcGuCUGCUGcCG- -5'
23743 3' -62.2 NC_005261.1 + 126056 0.66 0.667925
Target:  5'- cCCgCUCCgGCGCcagccgCCCGCcGGCcuCGGCg -3'
miRNA:   3'- -GG-GAGGaCGCG------GGGCGuCUGcuGCCG- -5'
23743 3' -62.2 NC_005261.1 + 53851 0.66 0.667925
Target:  5'- cCCUUCCggcaaGCGCUCCaGC--GCGGCGcGCg -3'
miRNA:   3'- -GGGAGGa----CGCGGGG-CGucUGCUGC-CG- -5'
23743 3' -62.2 NC_005261.1 + 73208 0.66 0.667925
Target:  5'- gCC-CCggGCGCCUCGagGGGCG-CGGUg -3'
miRNA:   3'- gGGaGGa-CGCGGGGCg-UCUGCuGCCG- -5'
23743 3' -62.2 NC_005261.1 + 92570 0.66 0.667925
Target:  5'- cCCCgcgcgCCgcGCGCCCacgcgcgagCGCAGcCGcucGCGGCg -3'
miRNA:   3'- -GGGa----GGa-CGCGGG---------GCGUCuGC---UGCCG- -5'
23743 3' -62.2 NC_005261.1 + 77066 0.66 0.667925
Target:  5'- gCCUggCCgGUGCCgCGCgAGGCGcUGGCg -3'
miRNA:   3'- -GGGa-GGaCGCGGgGCG-UCUGCuGCCG- -5'
23743 3' -62.2 NC_005261.1 + 69294 0.66 0.667925
Target:  5'- cCCCggCgcgGgGCgCCGguGGCGGCGGg -3'
miRNA:   3'- -GGGagGa--CgCGgGGCguCUGCUGCCg -5'
23743 3' -62.2 NC_005261.1 + 130000 0.66 0.667925
Target:  5'- gCgUCCUGUauguGCUUCGuCAcGACGGCGGUg -3'
miRNA:   3'- gGgAGGACG----CGGGGC-GU-CUGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 87455 0.66 0.662092
Target:  5'- gCCgCC-GCGCCUgcuCGCAGGCGcgcgucagguucggcGCGGCc -3'
miRNA:   3'- gGGaGGaCGCGGG---GCGUCUGC---------------UGCCG- -5'
23743 3' -62.2 NC_005261.1 + 35073 0.66 0.662092
Target:  5'- nUCUCC-GCGCCCCcucgcccucggagccGCGGugaGCGGCGaGCc -3'
miRNA:   3'- gGGAGGaCGCGGGG---------------CGUC---UGCUGC-CG- -5'
23743 3' -62.2 NC_005261.1 + 132607 0.66 0.662092
Target:  5'- nCCCggcgagCCgccagggggcgcugGCGCCgaggaCGCGGGCG-CGGCg -3'
miRNA:   3'- -GGGa-----GGa-------------CGCGGg----GCGUCUGCuGCCG- -5'
23743 3' -62.2 NC_005261.1 + 28766 0.66 0.6582
Target:  5'- nCCgggggcgCCUGgGCCgcggCGCGGGCGcucGCGGCc -3'
miRNA:   3'- gGGa------GGACgCGGg---GCGUCUGC---UGCCG- -5'
23743 3' -62.2 NC_005261.1 + 104912 0.66 0.6582
Target:  5'- gCCCUCCaGgGCCgCGguGAUGuuugccGCGcGCg -3'
miRNA:   3'- -GGGAGGaCgCGGgGCguCUGC------UGC-CG- -5'
23743 3' -62.2 NC_005261.1 + 3814 0.66 0.6582
Target:  5'- gCCgCUCgC-GCGCUgCCGCGGGCccgggcgcuGGCGGCa -3'
miRNA:   3'- -GG-GAG-GaCGCGG-GGCGUCUG---------CUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 78138 0.66 0.6582
Target:  5'- cCCCgccgCCccgGCGCCcgCCGCuGcCGGCGGg -3'
miRNA:   3'- -GGGa---GGa--CGCGG--GGCGuCuGCUGCCg -5'
23743 3' -62.2 NC_005261.1 + 32402 0.66 0.6582
Target:  5'- uCCCggagCgC-GUGCCgCCGCcGGCGACGGg -3'
miRNA:   3'- -GGGa---G-GaCGCGG-GGCGuCUGCUGCCg -5'
23743 3' -62.2 NC_005261.1 + 9604 0.66 0.6582
Target:  5'- cCCCgCCUcGgGCCCgggguggGCAGGCGGgGGUg -3'
miRNA:   3'- -GGGaGGA-CgCGGGg------CGUCUGCUgCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.