miRNA display CGI


Results 1 - 20 of 345 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23743 3' -62.2 NC_005261.1 + 41045 0.66 0.628939
Target:  5'- gUCC-CCgGCGCCggCCuCAGAgcCGGCGGCg -3'
miRNA:   3'- -GGGaGGaCGCGG--GGcGUCU--GCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 82548 0.66 0.6387
Target:  5'- cCCCUCCU-CG-CCCGCGGcCG-CGcGCc -3'
miRNA:   3'- -GGGAGGAcGCgGGGCGUCuGCuGC-CG- -5'
23743 3' -62.2 NC_005261.1 + 16426 0.66 0.61918
Target:  5'- gCCC-CCU-CGa-CgGCGGGCGGCGGCu -3'
miRNA:   3'- -GGGaGGAcGCggGgCGUCUGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 132080 0.66 0.61918
Target:  5'- gCCgCCgucGcCGCUgCCGCGGAgGGCGGCc -3'
miRNA:   3'- gGGaGGa--C-GCGG-GGCGUCUgCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 108159 0.66 0.6387
Target:  5'- gCCUgCaGCGCgUCCGCcaGGGCGcGCGGCc -3'
miRNA:   3'- gGGAgGaCGCG-GGGCG--UCUGC-UGCCG- -5'
23743 3' -62.2 NC_005261.1 + 137784 0.66 0.6387
Target:  5'- gCCC-CC-GgGCCCCGCcGcccGCGcCGGCg -3'
miRNA:   3'- -GGGaGGaCgCGGGGCGuC---UGCuGCCG- -5'
23743 3' -62.2 NC_005261.1 + 66268 0.66 0.623083
Target:  5'- gCCgUCCaccggGCGCCCgcggcugucgcagugCGuCAGGCG-CGGCa -3'
miRNA:   3'- -GGgAGGa----CGCGGG---------------GC-GUCUGCuGCCG- -5'
23743 3' -62.2 NC_005261.1 + 133838 0.66 0.628939
Target:  5'- gCCgCgUGCGCgCCGUGGcCGGCGcGCg -3'
miRNA:   3'- gGGaGgACGCGgGGCGUCuGCUGC-CG- -5'
23743 3' -62.2 NC_005261.1 + 60032 0.66 0.6387
Target:  5'- gCCCgccgCCgucgGCGCCgaCgGCGGcggcgaagaGCGGCGGCc -3'
miRNA:   3'- -GGGa---GGa---CGCGG--GgCGUC---------UGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 31917 0.66 0.628939
Target:  5'- aCC-CCgggGCGCCgCCGCuGGGCucugccGCGGCg -3'
miRNA:   3'- gGGaGGa--CGCGG-GGCG-UCUGc-----UGCCG- -5'
23743 3' -62.2 NC_005261.1 + 98441 0.66 0.6387
Target:  5'- aCCCgggCCgguagGCgGCgCCCGCAaaauccGACGgGCGGCc -3'
miRNA:   3'- -GGGa--GGa----CG-CG-GGGCGU------CUGC-UGCCG- -5'
23743 3' -62.2 NC_005261.1 + 132467 0.66 0.615279
Target:  5'- gCCCUCCgcgccggcaGCGCCUCGCcguccugGGACGcgcccgaccgcgacGCGGg -3'
miRNA:   3'- -GGGAGGa--------CGCGGGGCG-------UCUGC--------------UGCCg -5'
23743 3' -62.2 NC_005261.1 + 102747 0.66 0.61918
Target:  5'- uUCUUCaggGCGCUugCCGCGGACG-CGaGCg -3'
miRNA:   3'- -GGGAGga-CGCGG--GGCGUCUGCuGC-CG- -5'
23743 3' -62.2 NC_005261.1 + 130453 0.66 0.637723
Target:  5'- gUCUCCUacgacuggcccgaGCGgCUCGCGGcgugccuCGGCGGCg -3'
miRNA:   3'- gGGAGGA-------------CGCgGGGCGUCu------GCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 94990 0.66 0.623083
Target:  5'- gCC-CCgcgcGCGCCCCGCccugcggggcGGGCuauaaagccgccgccGGCGGCg -3'
miRNA:   3'- gGGaGGa---CGCGGGGCG----------UCUG---------------CUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 43505 0.66 0.6387
Target:  5'- aCCUCCUGCGCUgCGCcaGCGcCGu- -3'
miRNA:   3'- gGGAGGACGCGGgGCGucUGCuGCcg -5'
23743 3' -62.2 NC_005261.1 + 87932 0.66 0.6387
Target:  5'- aCCCggggCCUggagccGCGCgccgccacggCCCGCcGGCGGCGGg -3'
miRNA:   3'- -GGGa---GGA------CGCG----------GGGCGuCUGCUGCCg -5'
23743 3' -62.2 NC_005261.1 + 75132 0.66 0.628939
Target:  5'- aCCggcugaucgCCgaGCGCCCC-CuGGCGACGcGCg -3'
miRNA:   3'- gGGa--------GGa-CGCGGGGcGuCUGCUGC-CG- -5'
23743 3' -62.2 NC_005261.1 + 69605 0.66 0.628939
Target:  5'- gCCUUCgaccGCGCgCCCGCcgcccGGcACGGCGuGCg -3'
miRNA:   3'- gGGAGGa---CGCG-GGGCG-----UC-UGCUGC-CG- -5'
23743 3' -62.2 NC_005261.1 + 71459 0.66 0.668896
Target:  5'- gCCUCCcggagcaucaggaagGCcUCCCGguGcGCGGCGGCc -3'
miRNA:   3'- gGGAGGa--------------CGcGGGGCguC-UGCUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.