miRNA display CGI


Results 21 - 40 of 345 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23743 3' -62.2 NC_005261.1 + 126190 0.66 0.648456
Target:  5'- aCCUCgaccaGCCCCGCgcGGACcaGCGGCa -3'
miRNA:   3'- gGGAGgacg-CGGGGCG--UCUGc-UGCCG- -5'
23743 3' -62.2 NC_005261.1 + 69605 0.66 0.628939
Target:  5'- gCCUUCgaccGCGCgCCCGCcgcccGGcACGGCGuGCg -3'
miRNA:   3'- gGGAGGa---CGCG-GGGCG-----UC-UGCUGC-CG- -5'
23743 3' -62.2 NC_005261.1 + 131169 0.66 0.6387
Target:  5'- gCCUUCUGCuGCCgCaGCGGcuACGcccGCGGCg -3'
miRNA:   3'- gGGAGGACG-CGGgG-CGUC--UGC---UGCCG- -5'
23743 3' -62.2 NC_005261.1 + 88001 0.66 0.648456
Target:  5'- cUCCUCCcccgGCggGCCCguuaaaGCGGcCGGCGGUg -3'
miRNA:   3'- -GGGAGGa---CG--CGGGg-----CGUCuGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 3522 0.66 0.64553
Target:  5'- gCCUCCaGCGCggcggccgccucggCgCGCAGcGCGGCGGg -3'
miRNA:   3'- gGGAGGaCGCG--------------GgGCGUC-UGCUGCCg -5'
23743 3' -62.2 NC_005261.1 + 4183 0.66 0.652355
Target:  5'- gCCCgcgagCUUcGCGCUCUGCAGccaggccauggcgucGCGGCGcGCg -3'
miRNA:   3'- -GGGa----GGA-CGCGGGGCGUC---------------UGCUGC-CG- -5'
23743 3' -62.2 NC_005261.1 + 3814 0.66 0.6582
Target:  5'- gCCgCUCgC-GCGCUgCCGCGGGCccgggcgcuGGCGGCa -3'
miRNA:   3'- -GG-GAG-GaCGCGG-GGCGUCUG---------CUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 131878 0.66 0.648456
Target:  5'- gCUggCgGcCGCCgCCGCAcGCGACGGCg -3'
miRNA:   3'- gGGagGaC-GCGG-GGCGUcUGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 3858 0.66 0.648456
Target:  5'- ---gCCgGCGCCgCGCGGcCGGCGaGCa -3'
miRNA:   3'- gggaGGaCGCGGgGCGUCuGCUGC-CG- -5'
23743 3' -62.2 NC_005261.1 + 66268 0.66 0.623083
Target:  5'- gCCgUCCaccggGCGCCCgcggcugucgcagugCGuCAGGCG-CGGCa -3'
miRNA:   3'- -GGgAGGa----CGCGGG---------------GC-GUCUGCuGCCG- -5'
23743 3' -62.2 NC_005261.1 + 108159 0.66 0.6387
Target:  5'- gCCUgCaGCGCgUCCGCcaGGGCGcGCGGCc -3'
miRNA:   3'- gGGAgGaCGCG-GGGCG--UCUGC-UGCCG- -5'
23743 3' -62.2 NC_005261.1 + 132467 0.66 0.615279
Target:  5'- gCCCUCCgcgccggcaGCGCCUCGCcguccugGGACGcgcccgaccgcgacGCGGg -3'
miRNA:   3'- -GGGAGGa--------CGCGGGGCG-------UCUGC--------------UGCCg -5'
23743 3' -62.2 NC_005261.1 + 9604 0.66 0.6582
Target:  5'- cCCCgCCUcGgGCCCgggguggGCAGGCGGgGGUg -3'
miRNA:   3'- -GGGaGGA-CgCGGGg------CGUCUGCUgCCG- -5'
23743 3' -62.2 NC_005261.1 + 129632 0.66 0.648456
Target:  5'- gCCUUUgcagGCgGCaaCGguGGCGGCGGCg -3'
miRNA:   3'- gGGAGGa---CG-CGggGCguCUGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 71459 0.66 0.668896
Target:  5'- gCCUCCcggagcaucaggaagGCcUCCCGguGcGCGGCGGCc -3'
miRNA:   3'- gGGAGGa--------------CGcGGGGCguC-UGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 101 0.66 0.6387
Target:  5'- gCCC-CC-GgGCCCCGCcGcccGCGcCGGCg -3'
miRNA:   3'- -GGGaGGaCgCGGGGCGuC---UGCuGCCG- -5'
23743 3' -62.2 NC_005261.1 + 60032 0.66 0.6387
Target:  5'- gCCCgccgCCgucgGCGCCgaCgGCGGcggcgaagaGCGGCGGCc -3'
miRNA:   3'- -GGGa---GGa---CGCGG--GgCGUC---------UGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 135670 0.66 0.648456
Target:  5'- nCCCUCgcucgaggagcuCUGCGCCgCGCGG-CGGCuaaGCc -3'
miRNA:   3'- -GGGAG------------GACGCGGgGCGUCuGCUGc--CG- -5'
23743 3' -62.2 NC_005261.1 + 95384 0.66 0.6582
Target:  5'- gCCCcCCgGCGCgCCGCucGCGgccaucACGGCg -3'
miRNA:   3'- -GGGaGGaCGCGgGGCGucUGC------UGCCG- -5'
23743 3' -62.2 NC_005261.1 + 31917 0.66 0.628939
Target:  5'- aCC-CCgggGCGCCgCCGCuGGGCucugccGCGGCg -3'
miRNA:   3'- gGGaGGa--CGCGG-GGCG-UCUGc-----UGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.