miRNA display CGI


Results 41 - 60 of 345 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23743 3' -62.2 NC_005261.1 + 3814 0.66 0.6582
Target:  5'- gCCgCUCgC-GCGCUgCCGCGGGCccgggcgcuGGCGGCa -3'
miRNA:   3'- -GG-GAG-GaCGCGG-GGCGUCUG---------CUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 110169 0.66 0.6582
Target:  5'- gCCaCC-GCGCCCCcCGGGCGGCaGUu -3'
miRNA:   3'- gGGaGGaCGCGGGGcGUCUGCUGcCG- -5'
23743 3' -62.2 NC_005261.1 + 82548 0.66 0.6387
Target:  5'- cCCCUCCU-CG-CCCGCGGcCG-CGcGCc -3'
miRNA:   3'- -GGGAGGAcGCgGGGCGUCuGCuGC-CG- -5'
23743 3' -62.2 NC_005261.1 + 137784 0.66 0.6387
Target:  5'- gCCC-CC-GgGCCCCGCcGcccGCGcCGGCg -3'
miRNA:   3'- -GGGaGGaCgCGGGGCGuC---UGCuGCCG- -5'
23743 3' -62.2 NC_005261.1 + 3858 0.66 0.648456
Target:  5'- ---gCCgGCGCCgCGCGGcCGGCGaGCa -3'
miRNA:   3'- gggaGGaCGCGGgGCGUCuGCUGC-CG- -5'
23743 3' -62.2 NC_005261.1 + 104912 0.66 0.6582
Target:  5'- gCCCUCCaGgGCCgCGguGAUGuuugccGCGcGCg -3'
miRNA:   3'- -GGGAGGaCgCGGgGCguCUGC------UGC-CG- -5'
23743 3' -62.2 NC_005261.1 + 102747 0.66 0.61918
Target:  5'- uUCUUCaggGCGCUugCCGCGGACG-CGaGCg -3'
miRNA:   3'- -GGGAGga-CGCGG--GGCGUCUGCuGC-CG- -5'
23743 3' -62.2 NC_005261.1 + 132607 0.66 0.662092
Target:  5'- nCCCggcgagCCgccagggggcgcugGCGCCgaggaCGCGGGCG-CGGCg -3'
miRNA:   3'- -GGGa-----GGa-------------CGCGGg----GCGUCUGCuGCCG- -5'
23743 3' -62.2 NC_005261.1 + 69605 0.66 0.628939
Target:  5'- gCCUUCgaccGCGCgCCCGCcgcccGGcACGGCGuGCg -3'
miRNA:   3'- gGGAGGa---CGCG-GGGCG-----UC-UGCUGC-CG- -5'
23743 3' -62.2 NC_005261.1 + 73208 0.66 0.667925
Target:  5'- gCC-CCggGCGCCUCGagGGGCG-CGGUg -3'
miRNA:   3'- gGGaGGa-CGCGGGGCg-UCUGCuGCCG- -5'
23743 3' -62.2 NC_005261.1 + 34719 0.66 0.667925
Target:  5'- gCCUCagcggucgGCGCCCC-CuGGCGGCcGCg -3'
miRNA:   3'- gGGAGga------CGCGGGGcGuCUGCUGcCG- -5'
23743 3' -62.2 NC_005261.1 + 131169 0.66 0.6387
Target:  5'- gCCUUCUGCuGCCgCaGCGGcuACGcccGCGGCg -3'
miRNA:   3'- gGGAGGACG-CGGgG-CGUC--UGC---UGCCG- -5'
23743 3' -62.2 NC_005261.1 + 41045 0.66 0.628939
Target:  5'- gUCC-CCgGCGCCggCCuCAGAgcCGGCGGCg -3'
miRNA:   3'- -GGGaGGaCGCGG--GGcGUCU--GCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 126056 0.66 0.667925
Target:  5'- cCCgCUCCgGCGCcagccgCCCGCcGGCcuCGGCg -3'
miRNA:   3'- -GG-GAGGaCGCG------GGGCGuCUGcuGCCG- -5'
23743 3' -62.2 NC_005261.1 + 129632 0.66 0.648456
Target:  5'- gCCUUUgcagGCgGCaaCGguGGCGGCGGCg -3'
miRNA:   3'- gGGAGGa---CG-CGggGCguCUGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 42785 0.66 0.648456
Target:  5'- gCCUC--GCGCUCCauaaccgagcguGCAGACGuccGCGGCc -3'
miRNA:   3'- gGGAGgaCGCGGGG------------CGUCUGC---UGCCG- -5'
23743 3' -62.2 NC_005261.1 + 16426 0.66 0.61918
Target:  5'- gCCC-CCU-CGa-CgGCGGGCGGCGGCu -3'
miRNA:   3'- -GGGaGGAcGCggGgCGUCUGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 87455 0.66 0.662092
Target:  5'- gCCgCC-GCGCCUgcuCGCAGGCGcgcgucagguucggcGCGGCc -3'
miRNA:   3'- gGGaGGaCGCGGG---GCGUCUGC---------------UGCCG- -5'
23743 3' -62.2 NC_005261.1 + 78138 0.66 0.6582
Target:  5'- cCCCgccgCCccgGCGCCcgCCGCuGcCGGCGGg -3'
miRNA:   3'- -GGGa---GGa--CGCGG--GGCGuCuGCUGCCg -5'
23743 3' -62.2 NC_005261.1 + 23167 0.67 0.561038
Target:  5'- gCCCggcagGCGCgCCGgGGGCGACaGCg -3'
miRNA:   3'- -GGGagga-CGCGgGGCgUCUGCUGcCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.