miRNA display CGI


Results 61 - 80 of 345 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23743 3' -62.2 NC_005261.1 + 46229 0.67 0.609431
Target:  5'- gCCgcguggaCgaGCGCgUCGCAGgccGCGGCGGCg -3'
miRNA:   3'- gGGa------GgaCGCGgGGCGUC---UGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 68882 0.67 0.561038
Target:  5'- gCCgUCgUGCGCUgCGCGGACGcCGuCg -3'
miRNA:   3'- -GGgAGgACGCGGgGCGUCUGCuGCcG- -5'
23743 3' -62.2 NC_005261.1 + 59127 0.67 0.561997
Target:  5'- cCCCggccaccgacucaggCCgGCGCgCCC-CGGGCGcGCGGCg -3'
miRNA:   3'- -GGGa--------------GGaCGCG-GGGcGUCUGC-UGCCG- -5'
23743 3' -62.2 NC_005261.1 + 106600 0.67 0.567761
Target:  5'- cUCCUCCUGgaccucgucccagaCGCCgcggagCCGCGcGACGAgcuCGGCg -3'
miRNA:   3'- -GGGAGGAC--------------GCGG------GGCGU-CUGCU---GCCG- -5'
23743 3' -62.2 NC_005261.1 + 116615 0.67 0.570649
Target:  5'- gCCCUCgcacCGCccgCCCGCcGACGAgGGCg -3'
miRNA:   3'- -GGGAGgac-GCG---GGGCGuCUGCUgCCG- -5'
23743 3' -62.2 NC_005261.1 + 47652 0.67 0.612354
Target:  5'- gUCCUCCUcgacggccagccgcaGCGCCgagCGCAGcACGgccgcccGCGGCg -3'
miRNA:   3'- -GGGAGGA---------------CGCGGg--GCGUC-UGC-------UGCCG- -5'
23743 3' -62.2 NC_005261.1 + 91388 0.67 0.609431
Target:  5'- aUCC-CCUacgugaucgucGCGCCCgGCgaGGACGugGaGCg -3'
miRNA:   3'- -GGGaGGA-----------CGCGGGgCG--UCUGCugC-CG- -5'
23743 3' -62.2 NC_005261.1 + 91118 0.67 0.609431
Target:  5'- gCCgUCUcGCGCgCCGCGGcCGA-GGCc -3'
miRNA:   3'- -GGgAGGaCGCGgGGCGUCuGCUgCCG- -5'
23743 3' -62.2 NC_005261.1 + 68194 0.67 0.599697
Target:  5'- gCCC-CCUcGC-CCCCGCcgccGGCG-CGGCc -3'
miRNA:   3'- -GGGaGGA-CGcGGGGCGu---CUGCuGCCG- -5'
23743 3' -62.2 NC_005261.1 + 108001 0.67 0.609431
Target:  5'- gCCCgCCgucggGCaGCCCCaGCAG-CGGCaGCa -3'
miRNA:   3'- -GGGaGGa----CG-CGGGG-CGUCuGCUGcCG- -5'
23743 3' -62.2 NC_005261.1 + 14816 0.67 0.576435
Target:  5'- aCgUCCgcggcuuauagaUGCGCCgggagcacggcaGCAGGCGGCGGCg -3'
miRNA:   3'- gGgAGG------------ACGCGGgg----------CGUCUGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 5475 0.67 0.574505
Target:  5'- gCCC-CCgcuaucgcgcGCGCCgggggguagcuggggCCGCGGcaGCGGCGGCg -3'
miRNA:   3'- -GGGaGGa---------CGCGG---------------GGCGUC--UGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 115462 0.67 0.570649
Target:  5'- cUCCUCCgccucgGUGUCggUCGCGGgcucggccGCGGCGGCg -3'
miRNA:   3'- -GGGAGGa-----CGCGG--GGCGUC--------UGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 52968 0.67 0.570649
Target:  5'- gCCgcgCCggUGCgGCgCCgGCAGGCGGgGGCg -3'
miRNA:   3'- gGGa--GG--ACG-CG-GGgCGUCUGCUgCCG- -5'
23743 3' -62.2 NC_005261.1 + 38909 0.67 0.5803
Target:  5'- uUCUCCgGCGCgcgggCCCGCgcgccaAGcCGGCGGCc -3'
miRNA:   3'- gGGAGGaCGCG-----GGGCG------UCuGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 45333 0.67 0.579333
Target:  5'- gCCCU-CUGCGUCgUGCAGAUguuccugGAgGGCu -3'
miRNA:   3'- -GGGAgGACGCGGgGCGUCUG-------CUgCCG- -5'
23743 3' -62.2 NC_005261.1 + 105215 0.67 0.574505
Target:  5'- uCCCgCC-GCGCgggCCGCGGccgcggccgugaucuGCGGCGGCa -3'
miRNA:   3'- -GGGaGGaCGCGg--GGCGUC---------------UGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 56745 0.67 0.5803
Target:  5'- gCCUUCCUGCGUgUCGCcuucaacACGcCGGCc -3'
miRNA:   3'- -GGGAGGACGCGgGGCGuc-----UGCuGCCG- -5'
23743 3' -62.2 NC_005261.1 + 119006 0.67 0.5803
Target:  5'- gCCUgCUGgGCCCgCGCcGACGaAUGaGCg -3'
miRNA:   3'- gGGAgGACgCGGG-GCGuCUGC-UGC-CG- -5'
23743 3' -62.2 NC_005261.1 + 64930 0.67 0.5803
Target:  5'- -gCUCCUGCuCgCCGCccagGGGCGcguGCGGCa -3'
miRNA:   3'- ggGAGGACGcGgGGCG----UCUGC---UGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.