Results 1 - 20 of 345 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23743 | 3' | -62.2 | NC_005261.1 | + | 97806 | 0.91 | 0.015674 |
Target: 5'- aCCgUCCgccgGCGcCCCCGCAGACGGCGGCa -3' miRNA: 3'- -GGgAGGa---CGC-GGGGCGUCUGCUGCCG- -5' |
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23743 | 3' | -62.2 | NC_005261.1 | + | 10094 | 0.81 | 0.080621 |
Target: 5'- aCCC-CCgccGCGCCCCgGCAG-CGGCGGCg -3' miRNA: 3'- -GGGaGGa--CGCGGGG-CGUCuGCUGCCG- -5' |
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23743 | 3' | -62.2 | NC_005261.1 | + | 104984 | 0.8 | 0.09626 |
Target: 5'- cCCCgccCCgGCGCCCagCGCGGGCGGCGGUc -3' miRNA: 3'- -GGGa--GGaCGCGGG--GCGUCUGCUGCCG- -5' |
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23743 | 3' | -62.2 | NC_005261.1 | + | 59768 | 0.8 | 0.101231 |
Target: 5'- gCCUCCaUGUGCUcggCCGCAG-CGACGGCg -3' miRNA: 3'- gGGAGG-ACGCGG---GGCGUCuGCUGCCG- -5' |
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23743 | 3' | -62.2 | NC_005261.1 | + | 107112 | 0.79 | 0.117634 |
Target: 5'- cCCCagCC-GCGCCaCCGCGccGGCGACGGCg -3' miRNA: 3'- -GGGa-GGaCGCGG-GGCGU--CUGCUGCCG- -5' |
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23743 | 3' | -62.2 | NC_005261.1 | + | 121376 | 0.79 | 0.117634 |
Target: 5'- -aCUgCagGCGCCCCGCGG-CGGCGGCg -3' miRNA: 3'- ggGAgGa-CGCGGGGCGUCuGCUGCCG- -5' |
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23743 | 3' | -62.2 | NC_005261.1 | + | 63004 | 0.79 | 0.120598 |
Target: 5'- gCCCUCggcggccGCGCCCgCGCGGGCGcCGGCg -3' miRNA: 3'- -GGGAGga-----CGCGGG-GCGUCUGCuGCCG- -5' |
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23743 | 3' | -62.2 | NC_005261.1 | + | 111662 | 0.78 | 0.129591 |
Target: 5'- gCCCUCCcGCGCCgCGguGGCGGCguacgucGGCg -3' miRNA: 3'- -GGGAGGaCGCGGgGCguCUGCUG-------CCG- -5' |
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23743 | 3' | -62.2 | NC_005261.1 | + | 4819 | 0.77 | 0.146922 |
Target: 5'- uUCCUCC-GCGUUgggCGCAGGCGGCGGCg -3' miRNA: 3'- -GGGAGGaCGCGGg--GCGUCUGCUGCCG- -5' |
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23743 | 3' | -62.2 | NC_005261.1 | + | 50770 | 0.77 | 0.146922 |
Target: 5'- aCCCUCa-GCGCacaCCGCGG-CGGCGGCc -3' miRNA: 3'- -GGGAGgaCGCGg--GGCGUCuGCUGCCG- -5' |
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23743 | 3' | -62.2 | NC_005261.1 | + | 66073 | 0.77 | 0.150559 |
Target: 5'- cCCCUCCa--GCCCCaGCAGAUGcGCGGCc -3' miRNA: 3'- -GGGAGGacgCGGGG-CGUCUGC-UGCCG- -5' |
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23743 | 3' | -62.2 | NC_005261.1 | + | 88252 | 0.76 | 0.169997 |
Target: 5'- gUCCUCCUuccgcuucaucGCGCCgCGCugccuggacGACGACGGCg -3' miRNA: 3'- -GGGAGGA-----------CGCGGgGCGu--------CUGCUGCCG- -5' |
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23743 | 3' | -62.2 | NC_005261.1 | + | 31096 | 0.76 | 0.174145 |
Target: 5'- cCCCaugCCgcccgGCgGCCCCGCcgccGACGGCGGCu -3' miRNA: 3'- -GGGa--GGa----CG-CGGGGCGu---CUGCUGCCG- -5' |
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23743 | 3' | -62.2 | NC_005261.1 | + | 56412 | 0.76 | 0.178383 |
Target: 5'- gCCCUgCgcuucgcgGCGCaCCCGCcugcggAGGCGGCGGCg -3' miRNA: 3'- -GGGAgGa-------CGCG-GGGCG------UCUGCUGCCG- -5' |
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23743 | 3' | -62.2 | NC_005261.1 | + | 31666 | 0.75 | 0.215685 |
Target: 5'- cCUCUgCCUGCgGCUggCCGCGGcGCGGCGGCg -3' miRNA: 3'- -GGGA-GGACG-CGG--GGCGUC-UGCUGCCG- -5' |
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23743 | 3' | -62.2 | NC_005261.1 | + | 76215 | 0.75 | 0.215685 |
Target: 5'- gCCgcgCCUGCGCCgCGCGcuuGACGagacGCGGCg -3' miRNA: 3'- gGGa--GGACGCGGgGCGU---CUGC----UGCCG- -5' |
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23743 | 3' | -62.2 | NC_005261.1 | + | 55273 | 0.75 | 0.220792 |
Target: 5'- gCCC-CCUgGCGCgCCGgAGGCGGgGGCg -3' miRNA: 3'- -GGGaGGA-CGCGgGGCgUCUGCUgCCG- -5' |
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23743 | 3' | -62.2 | NC_005261.1 | + | 90061 | 0.74 | 0.226001 |
Target: 5'- gCCagCgGCGCCCCGCGGGCgccGAgGGCa -3' miRNA: 3'- gGGagGaCGCGGGGCGUCUG---CUgCCG- -5' |
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23743 | 3' | -62.2 | NC_005261.1 | + | 78406 | 0.74 | 0.231315 |
Target: 5'- uUCCUCC-GUGCUCUGUGGGCGAUGGg -3' miRNA: 3'- -GGGAGGaCGCGGGGCGUCUGCUGCCg -5' |
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23743 | 3' | -62.2 | NC_005261.1 | + | 132146 | 0.74 | 0.231315 |
Target: 5'- gCCCUCCUccucgagcGCGCCgCCGCugcaggcagcgcGGGCGGgGGCc -3' miRNA: 3'- -GGGAGGA--------CGCGG-GGCG------------UCUGCUgCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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