miRNA display CGI


Results 21 - 40 of 345 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23743 3' -62.2 NC_005261.1 + 132146 0.74 0.231315
Target:  5'- gCCCUCCUccucgagcGCGCCgCCGCugcaggcagcgcGGGCGGgGGCc -3'
miRNA:   3'- -GGGAGGA--------CGCGG-GGCG------------UCUGCUgCCG- -5'
23743 3' -62.2 NC_005261.1 + 78406 0.74 0.231315
Target:  5'- uUCCUCC-GUGCUCUGUGGGCGAUGGg -3'
miRNA:   3'- -GGGAGGaCGCGGGGCGUCUGCUGCCg -5'
23743 3' -62.2 NC_005261.1 + 36612 0.74 0.231315
Target:  5'- gCgCUCCUGCGCCCCGgCGcACaaACGGCg -3'
miRNA:   3'- -GgGAGGACGCGGGGC-GUcUGc-UGCCG- -5'
23743 3' -62.2 NC_005261.1 + 129930 0.74 0.23893
Target:  5'- gCCCUCCacgGCGCCCaccgagugguacaucUGCAGcAgGGCGGCc -3'
miRNA:   3'- -GGGAGGa--CGCGGG---------------GCGUC-UgCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 103400 0.74 0.242257
Target:  5'- gCCgCCUGCGCCUccagcuccgCGCGGGCcGCGGCc -3'
miRNA:   3'- gGGaGGACGCGGG---------GCGUCUGcUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 33777 0.74 0.242257
Target:  5'- gCCCgcggcgagCgCUGgGCCCCGCgcGGGCGGCGGg -3'
miRNA:   3'- -GGGa-------G-GACgCGGGGCG--UCUGCUGCCg -5'
23743 3' -62.2 NC_005261.1 + 6241 0.74 0.242257
Target:  5'- gCCCggggagggCCUGCccGCCCCGCGG--GGCGGCc -3'
miRNA:   3'- -GGGa-------GGACG--CGGGGCGUCugCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 98651 0.74 0.247888
Target:  5'- gCCaCUCCUcgGCCCCcCAGGCGAgGGCg -3'
miRNA:   3'- -GG-GAGGAcgCGGGGcGUCUGCUgCCG- -5'
23743 3' -62.2 NC_005261.1 + 58555 0.74 0.247888
Target:  5'- -gCUCCUGCGCCgUCGUGGccGCGAgCGGCg -3'
miRNA:   3'- ggGAGGACGCGG-GGCGUC--UGCU-GCCG- -5'
23743 3' -62.2 NC_005261.1 + 64396 0.74 0.247888
Target:  5'- aCCUCCUGCaGCaCCaGCAGcGCGuCGGCg -3'
miRNA:   3'- gGGAGGACG-CG-GGgCGUC-UGCuGCCG- -5'
23743 3' -62.2 NC_005261.1 + 76852 0.74 0.253627
Target:  5'- gCUCUCCUcgcgccgccugGCGCCCgGCgaggAGGcCGACGGCa -3'
miRNA:   3'- -GGGAGGA-----------CGCGGGgCG----UCU-GCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 68667 0.74 0.255953
Target:  5'- gCCCgcgCCgccgGCGUCCgCcgcgugggggccggcGCGGACGACGGCg -3'
miRNA:   3'- -GGGa--GGa---CGCGGG-G---------------CGUCUGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 83064 0.73 0.259475
Target:  5'- uCCCUgC-GCGCCcCCGCGG-CGGcCGGCg -3'
miRNA:   3'- -GGGAgGaCGCGG-GGCGUCuGCU-GCCG- -5'
23743 3' -62.2 NC_005261.1 + 83996 0.73 0.259475
Target:  5'- cCCCUCCcGCgGCCCCcgGCgggaugcgcaaAGACGACGGa -3'
miRNA:   3'- -GGGAGGaCG-CGGGG--CG-----------UCUGCUGCCg -5'
23743 3' -62.2 NC_005261.1 + 80113 0.73 0.265432
Target:  5'- aCCggCUUGgGCgCCGCGGcaGCGGCGGCg -3'
miRNA:   3'- gGGa-GGACgCGgGGCGUC--UGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 129302 0.73 0.265432
Target:  5'- gCCC-CCgGCGCCCCGCGccuGCGcUGGCg -3'
miRNA:   3'- -GGGaGGaCGCGGGGCGUc--UGCuGCCG- -5'
23743 3' -62.2 NC_005261.1 + 134352 0.73 0.265432
Target:  5'- gCCC-CC-GCGCCgCCGCgcGGGgGGCGGCg -3'
miRNA:   3'- -GGGaGGaCGCGG-GGCG--UCUgCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 20534 0.73 0.283969
Target:  5'- gUCUCCgaccGCGCUCUGCuGGACGugGCGGCg -3'
miRNA:   3'- gGGAGGa---CGCGGGGCG-UCUGC--UGCCG- -5'
23743 3' -62.2 NC_005261.1 + 103179 0.73 0.283969
Target:  5'- gCCggUCCUGCaCgCCCGCGGucacgcGCGGCGGCg -3'
miRNA:   3'- gGG--AGGACGcG-GGGCGUC------UGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 109322 0.73 0.283969
Target:  5'- gCCUCCgcgaGCGCggCCGCGGGguCGGCGGCc -3'
miRNA:   3'- gGGAGGa---CGCGg-GGCGUCU--GCUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.