miRNA display CGI


Results 41 - 60 of 345 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23743 3' -62.2 NC_005261.1 + 118756 0.73 0.286516
Target:  5'- aCCUCUguUGCGCUacgcgcgcgccgacgCUGCAGACGGCGcGCu -3'
miRNA:   3'- gGGAGG--ACGCGG---------------GGCGUCUGCUGC-CG- -5'
23743 3' -62.2 NC_005261.1 + 102920 0.73 0.287797
Target:  5'- gCCUCCgccgcuucgcgcaGCGCCgCCGCcgcugcGGCGGCGGCc -3'
miRNA:   3'- gGGAGGa------------CGCGG-GGCGu-----CUGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 68987 0.73 0.290371
Target:  5'- gCCCUUUUcGgGCCgCGCGGGCGccGCGGCu -3'
miRNA:   3'- -GGGAGGA-CgCGGgGCGUCUGC--UGCCG- -5'
23743 3' -62.2 NC_005261.1 + 88784 0.73 0.290371
Target:  5'- gCCCUggCCgccgGCGCCgCGCAGcaggacgcCGGCGGCg -3'
miRNA:   3'- -GGGA--GGa---CGCGGgGCGUCu-------GCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 60292 0.73 0.290371
Target:  5'- gCCC-CC-GCGgCCCGCAGGCaGuCGGCu -3'
miRNA:   3'- -GGGaGGaCGCgGGGCGUCUG-CuGCCG- -5'
23743 3' -62.2 NC_005261.1 + 35501 0.72 0.296886
Target:  5'- aCCCgcCCU-UGCCCCGCuGGCaGCGGCa -3'
miRNA:   3'- -GGGa-GGAcGCGGGGCGuCUGcUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 57433 0.72 0.296886
Target:  5'- gCCCaggaUGCGCaCCCGC--GCGACGGCg -3'
miRNA:   3'- -GGGagg-ACGCG-GGGCGucUGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 93923 0.72 0.310255
Target:  5'- gCCCgcgggCUUGCGCCguCCGCGGGCGccgccuccggGCGGUc -3'
miRNA:   3'- -GGGa----GGACGCGG--GGCGUCUGC----------UGCCG- -5'
23743 3' -62.2 NC_005261.1 + 67135 0.72 0.310255
Target:  5'- gCCCgaCCgcgGCGCCCguuuuauacccaCGCGG-CGGCGGCg -3'
miRNA:   3'- -GGGa-GGa--CGCGGG------------GCGUCuGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 38591 0.72 0.317109
Target:  5'- uCCCUgCUgGCGgCCCGCGGcUGGCGGg -3'
miRNA:   3'- -GGGAgGA-CGCgGGGCGUCuGCUGCCg -5'
23743 3' -62.2 NC_005261.1 + 77636 0.72 0.317109
Target:  5'- gCCCUggCCgGCGCCaUCGCcGACGGcCGGCg -3'
miRNA:   3'- -GGGA--GGaCGCGG-GGCGuCUGCU-GCCG- -5'
23743 3' -62.2 NC_005261.1 + 105940 0.72 0.317109
Target:  5'- gCCCUCCgcgaGCGCgCCGUcGAUGGCcucGGCg -3'
miRNA:   3'- -GGGAGGa---CGCGgGGCGuCUGCUG---CCG- -5'
23743 3' -62.2 NC_005261.1 + 47025 0.72 0.324077
Target:  5'- --gUCCa--GCCCCGC-GACGGCGGCg -3'
miRNA:   3'- gggAGGacgCGGGGCGuCUGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 62294 0.72 0.324077
Target:  5'- aCgUCg-GCGCCgCGCGGGCGcGCGGCg -3'
miRNA:   3'- gGgAGgaCGCGGgGCGUCUGC-UGCCG- -5'
23743 3' -62.2 NC_005261.1 + 34363 0.72 0.324077
Target:  5'- gCCgggcgCCgcgcgGCGCCgCgCGCAGACG-CGGCg -3'
miRNA:   3'- gGGa----GGa----CGCGG-G-GCGUCUGCuGCCG- -5'
23743 3' -62.2 NC_005261.1 + 58967 0.72 0.330445
Target:  5'- gCCUCg-GCGCCCgCGUcgaaggccuccacGGGCGGCGGUg -3'
miRNA:   3'- gGGAGgaCGCGGG-GCG-------------UCUGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 68263 0.72 0.331158
Target:  5'- gCCUggcgcgCCUGCGCCCgCGCGG-CGGggcccCGGCc -3'
miRNA:   3'- -GGGa-----GGACGCGGG-GCGUCuGCU-----GCCG- -5'
23743 3' -62.2 NC_005261.1 + 98305 0.72 0.331158
Target:  5'- gCCUCgggggcggGCGCCgCCGCcaGCGGCGGCg -3'
miRNA:   3'- gGGAGga------CGCGG-GGCGucUGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 39762 0.72 0.331158
Target:  5'- gCCUCCUGCaggaugGCCUCGaGGACGucgccgggggGCGGCg -3'
miRNA:   3'- gGGAGGACG------CGGGGCgUCUGC----------UGCCG- -5'
23743 3' -62.2 NC_005261.1 + 66664 0.72 0.331158
Target:  5'- cUCCUCCgcgaGCaGCCCCaGCGccuCGGCGGCg -3'
miRNA:   3'- -GGGAGGa---CG-CGGGG-CGUcu-GCUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.