miRNA display CGI


Results 61 - 80 of 345 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23743 3' -62.2 NC_005261.1 + 68263 0.72 0.331158
Target:  5'- gCCUggcgcgCCUGCGCCCgCGCGG-CGGggcccCGGCc -3'
miRNA:   3'- -GGGa-----GGACGCGGG-GCGUCuGCU-----GCCG- -5'
23743 3' -62.2 NC_005261.1 + 39318 0.72 0.331158
Target:  5'- uUCCUCgCguccaaccGCGCCgCCGCGGccaagcugcgcGCGGCGGCa -3'
miRNA:   3'- -GGGAG-Ga-------CGCGG-GGCGUC-----------UGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 1391 0.72 0.338353
Target:  5'- gCCacgCCggGCGCCgcggCCGCGG-CGGCGGCg -3'
miRNA:   3'- -GGga-GGa-CGCGG----GGCGUCuGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 3151 0.72 0.338353
Target:  5'- cCCCgUCCgagGC-CCCgGCGG-CGGCGGCc -3'
miRNA:   3'- -GGG-AGGa--CGcGGGgCGUCuGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 133783 0.72 0.338353
Target:  5'- gCCCUCgUGCGgcgcaUCCCGCccGGGCugcucGACGGCg -3'
miRNA:   3'- -GGGAGgACGC-----GGGGCG--UCUG-----CUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 103483 0.72 0.339078
Target:  5'- gUCCagCUgGCGCaagacgucgucggcgCCGCGGACGGCGGCg -3'
miRNA:   3'- -GGGagGA-CGCGg--------------GGCGUCUGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 60922 0.71 0.34566
Target:  5'- gCCCUCCacggcgGCGaCCCGCGGGCcgUGGCc -3'
miRNA:   3'- -GGGAGGa-----CGCgGGGCGUCUGcuGCCG- -5'
23743 3' -62.2 NC_005261.1 + 93713 0.71 0.34566
Target:  5'- uUCCUCCU-CGUCgUCGUcGGCGGCGGCa -3'
miRNA:   3'- -GGGAGGAcGCGG-GGCGuCUGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 102540 0.71 0.34566
Target:  5'- gCCgCCUGCGgCCC-CAGGCGccCGGCg -3'
miRNA:   3'- gGGaGGACGCgGGGcGUCUGCu-GCCG- -5'
23743 3' -62.2 NC_005261.1 + 69156 0.71 0.34566
Target:  5'- aCCCgcaCC-GCGCCgCCGCGccccuuGACGAgGGCa -3'
miRNA:   3'- -GGGa--GGaCGCGG-GGCGU------CUGCUgCCG- -5'
23743 3' -62.2 NC_005261.1 + 10884 0.71 0.35308
Target:  5'- cCCCgagCCcgGCGCCaaCgGCGG-CGGCGGCa -3'
miRNA:   3'- -GGGa--GGa-CGCGG--GgCGUCuGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 57832 0.71 0.35308
Target:  5'- --gUCCacGUGCUCCGCGGGCGcggGCGGCa -3'
miRNA:   3'- gggAGGa-CGCGGGGCGUCUGC---UGCCG- -5'
23743 3' -62.2 NC_005261.1 + 55562 0.71 0.35308
Target:  5'- gCCCacgCCcacGuCGcCCCCGCAGuccGCGGCGGCg -3'
miRNA:   3'- -GGGa--GGa--C-GC-GGGGCGUC---UGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 120351 0.71 0.35308
Target:  5'- gUCUcCCUGCGCUggaCGguGcGCGACGGCg -3'
miRNA:   3'- gGGA-GGACGCGGg--GCguC-UGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 58200 0.71 0.359853
Target:  5'- cUCCUCCgucagcgcGCGCgCCaGCAGcgcgcccGCGGCGGCg -3'
miRNA:   3'- -GGGAGGa-------CGCGgGG-CGUC-------UGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 118424 0.71 0.360612
Target:  5'- gCUggCUGuCGCCgCCGCGGACGccgccGCGGCg -3'
miRNA:   3'- gGGagGAC-GCGG-GGCGUCUGC-----UGCCG- -5'
23743 3' -62.2 NC_005261.1 + 94465 0.71 0.360612
Target:  5'- cCCCUCCgcgucgGCGUcguCCCGCGGGCcg-GGCa -3'
miRNA:   3'- -GGGAGGa-----CGCG---GGGCGUCUGcugCCG- -5'
23743 3' -62.2 NC_005261.1 + 103848 0.71 0.360612
Target:  5'- gCC-CUUGCGCgcgagCCGCGG-CGGCGGCg -3'
miRNA:   3'- gGGaGGACGCGg----GGCGUCuGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 121689 0.71 0.360612
Target:  5'- gCCCUCCagguUGCGCauggaggCGUAGAcgcCGACGGCg -3'
miRNA:   3'- -GGGAGG----ACGCGgg-----GCGUCU---GCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 127079 0.71 0.360612
Target:  5'- gCCgCCgccGCGCCgCCGCA-AUGACGGCu -3'
miRNA:   3'- gGGaGGa--CGCGG-GGCGUcUGCUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.