Results 21 - 40 of 345 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23743 | 3' | -62.2 | NC_005261.1 | + | 116861 | 0.66 | 0.6582 |
Target: 5'- aCCUCCUuucaguggGC-CCCCGCccgcGAgGACGcGCg -3' miRNA: 3'- gGGAGGA--------CGcGGGGCGu---CUgCUGC-CG- -5' |
|||||||
23743 | 3' | -62.2 | NC_005261.1 | + | 127905 | 0.66 | 0.6582 |
Target: 5'- gCCCgggCCUGgGCuugggcucgggCCCGCucGAUG-CGGCg -3' miRNA: 3'- -GGGa--GGACgCG-----------GGGCGu-CUGCuGCCG- -5' |
|||||||
23743 | 3' | -62.2 | NC_005261.1 | + | 9604 | 0.66 | 0.6582 |
Target: 5'- cCCCgCCUcGgGCCCgggguggGCAGGCGGgGGUg -3' miRNA: 3'- -GGGaGGA-CgCGGGg------CGUCUGCUgCCG- -5' |
|||||||
23743 | 3' | -62.2 | NC_005261.1 | + | 95384 | 0.66 | 0.6582 |
Target: 5'- gCCCcCCgGCGCgCCGCucGCGgccaucACGGCg -3' miRNA: 3'- -GGGaGGaCGCGgGGCGucUGC------UGCCG- -5' |
|||||||
23743 | 3' | -62.2 | NC_005261.1 | + | 4183 | 0.66 | 0.652355 |
Target: 5'- gCCCgcgagCUUcGCGCUCUGCAGccaggccauggcgucGCGGCGcGCg -3' miRNA: 3'- -GGGa----GGA-CGCGGGGCGUC---------------UGCUGC-CG- -5' |
|||||||
23743 | 3' | -62.2 | NC_005261.1 | + | 76416 | 0.66 | 0.64943 |
Target: 5'- cCCCggcgcgugcagagcgCCgGCGCCauggcggaCGCGcccgacGGCGACGGCg -3' miRNA: 3'- -GGGa--------------GGaCGCGGg-------GCGU------CUGCUGCCG- -5' |
|||||||
23743 | 3' | -62.2 | NC_005261.1 | + | 126190 | 0.66 | 0.648456 |
Target: 5'- aCCUCgaccaGCCCCGCgcGGACcaGCGGCa -3' miRNA: 3'- gGGAGgacg-CGGGGCG--UCUGc-UGCCG- -5' |
|||||||
23743 | 3' | -62.2 | NC_005261.1 | + | 130608 | 0.66 | 0.648456 |
Target: 5'- gCCCgucuuugCCUGCGCCUucaacagcgCGCGgGGCGcGCGuGCg -3' miRNA: 3'- -GGGa------GGACGCGGG---------GCGU-CUGC-UGC-CG- -5' |
|||||||
23743 | 3' | -62.2 | NC_005261.1 | + | 42785 | 0.66 | 0.648456 |
Target: 5'- gCCUC--GCGCUCCauaaccgagcguGCAGACGuccGCGGCc -3' miRNA: 3'- gGGAGgaCGCGGGG------------CGUCUGC---UGCCG- -5' |
|||||||
23743 | 3' | -62.2 | NC_005261.1 | + | 135670 | 0.66 | 0.648456 |
Target: 5'- nCCCUCgcucgaggagcuCUGCGCCgCGCGG-CGGCuaaGCc -3' miRNA: 3'- -GGGAG------------GACGCGGgGCGUCuGCUGc--CG- -5' |
|||||||
23743 | 3' | -62.2 | NC_005261.1 | + | 74906 | 0.66 | 0.648456 |
Target: 5'- gCCCgCgCUG-GCCgCGCGGGgGAgGGCg -3' miRNA: 3'- -GGGaG-GACgCGGgGCGUCUgCUgCCG- -5' |
|||||||
23743 | 3' | -62.2 | NC_005261.1 | + | 88001 | 0.66 | 0.648456 |
Target: 5'- cUCCUCCcccgGCggGCCCguuaaaGCGGcCGGCGGUg -3' miRNA: 3'- -GGGAGGa---CG--CGGGg-----CGUCuGCUGCCG- -5' |
|||||||
23743 | 3' | -62.2 | NC_005261.1 | + | 22724 | 0.66 | 0.648456 |
Target: 5'- gCCggaggaCCaGCGCCagucgggCGCgGGGCGGCGGCg -3' miRNA: 3'- gGGa-----GGaCGCGGg------GCG-UCUGCUGCCG- -5' |
|||||||
23743 | 3' | -62.2 | NC_005261.1 | + | 3858 | 0.66 | 0.648456 |
Target: 5'- ---gCCgGCGCCgCGCGGcCGGCGaGCa -3' miRNA: 3'- gggaGGaCGCGGgGCGUCuGCUGC-CG- -5' |
|||||||
23743 | 3' | -62.2 | NC_005261.1 | + | 131878 | 0.66 | 0.648456 |
Target: 5'- gCUggCgGcCGCCgCCGCAcGCGACGGCg -3' miRNA: 3'- gGGagGaC-GCGG-GGCGUcUGCUGCCG- -5' |
|||||||
23743 | 3' | -62.2 | NC_005261.1 | + | 129632 | 0.66 | 0.648456 |
Target: 5'- gCCUUUgcagGCgGCaaCGguGGCGGCGGCg -3' miRNA: 3'- gGGAGGa---CG-CGggGCguCUGCUGCCG- -5' |
|||||||
23743 | 3' | -62.2 | NC_005261.1 | + | 3522 | 0.66 | 0.64553 |
Target: 5'- gCCUCCaGCGCggcggccgccucggCgCGCAGcGCGGCGGg -3' miRNA: 3'- gGGAGGaCGCG--------------GgGCGUC-UGCUGCCg -5' |
|||||||
23743 | 3' | -62.2 | NC_005261.1 | + | 39855 | 0.66 | 0.644554 |
Target: 5'- uCCCgCCggGCGCCCaggcacacggccaGCAGGCcGCGcGCg -3' miRNA: 3'- -GGGaGGa-CGCGGGg------------CGUCUGcUGC-CG- -5' |
|||||||
23743 | 3' | -62.2 | NC_005261.1 | + | 137784 | 0.66 | 0.6387 |
Target: 5'- gCCC-CC-GgGCCCCGCcGcccGCGcCGGCg -3' miRNA: 3'- -GGGaGGaCgCGGGGCGuC---UGCuGCCG- -5' |
|||||||
23743 | 3' | -62.2 | NC_005261.1 | + | 108159 | 0.66 | 0.6387 |
Target: 5'- gCCUgCaGCGCgUCCGCcaGGGCGcGCGGCc -3' miRNA: 3'- gGGAgGaCGCG-GGGCG--UCUGC-UGCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home