miRNA display CGI


Results 61 - 80 of 345 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23743 3' -62.2 NC_005261.1 + 46229 0.67 0.609431
Target:  5'- gCCgcguggaCgaGCGCgUCGCAGgccGCGGCGGCg -3'
miRNA:   3'- gGGa------GgaCGCGgGGCGUC---UGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 91388 0.67 0.609431
Target:  5'- aUCC-CCUacgugaucgucGCGCCCgGCgaGGACGugGaGCg -3'
miRNA:   3'- -GGGaGGA-----------CGCGGGgCG--UCUGCugC-CG- -5'
23743 3' -62.2 NC_005261.1 + 91118 0.67 0.609431
Target:  5'- gCCgUCUcGCGCgCCGCGGcCGA-GGCc -3'
miRNA:   3'- -GGgAGGaCGCGgGGCGUCuGCUgCCG- -5'
23743 3' -62.2 NC_005261.1 + 108001 0.67 0.609431
Target:  5'- gCCCgCCgucggGCaGCCCCaGCAG-CGGCaGCa -3'
miRNA:   3'- -GGGaGGa----CG-CGGGG-CGUCuGCUGcCG- -5'
23743 3' -62.2 NC_005261.1 + 133376 0.67 0.599697
Target:  5'- gCUgCCUGCGCgcggCCCaCGGGCGcGCGGCc -3'
miRNA:   3'- gGGaGGACGCG----GGGcGUCUGC-UGCCG- -5'
23743 3' -62.2 NC_005261.1 + 51861 0.67 0.599697
Target:  5'- gCCUUCUacggccacgugaGCGCCgCGCGGcaGCaGCGGCg -3'
miRNA:   3'- gGGAGGA------------CGCGGgGCGUC--UGcUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 33486 0.67 0.599697
Target:  5'- gCCCgCUcGCGgggCCCGCgagcaccagGGGCGGCGGCg -3'
miRNA:   3'- -GGGaGGaCGCg--GGGCG---------UCUGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 68194 0.67 0.599697
Target:  5'- gCCC-CCUcGC-CCCCGCcgccGGCG-CGGCc -3'
miRNA:   3'- -GGGaGGA-CGcGGGGCGu---CUGCuGCCG- -5'
23743 3' -62.2 NC_005261.1 + 67517 0.67 0.599697
Target:  5'- ---gCCaGCGUCgCCGCGGcgcccGCGGCGGCg -3'
miRNA:   3'- gggaGGaCGCGG-GGCGUC-----UGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 31193 0.67 0.599697
Target:  5'- gCCUaCUGcCGCCCCGaGGuCG-CGGCg -3'
miRNA:   3'- gGGAgGAC-GCGGGGCgUCuGCuGCCG- -5'
23743 3' -62.2 NC_005261.1 + 91665 0.67 0.599697
Target:  5'- aCCUgCUcaaGCGCUuuauuCCGgAGACGACGcGCg -3'
miRNA:   3'- gGGAgGA---CGCGG-----GGCgUCUGCUGC-CG- -5'
23743 3' -62.2 NC_005261.1 + 35047 0.67 0.599697
Target:  5'- gCCCUaacgGCGgCCgCGCGG-CGGCGGUc -3'
miRNA:   3'- -GGGAgga-CGCgGG-GCGUCuGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 32308 0.67 0.599697
Target:  5'- gCCC-CC-GcCGCCgCCGCGGcCG-CGGCg -3'
miRNA:   3'- -GGGaGGaC-GCGG-GGCGUCuGCuGCCG- -5'
23743 3' -62.2 NC_005261.1 + 36934 0.67 0.598724
Target:  5'- -aCUCCgGgGCCCUGCGcuGGCGcaaggcccgccgcGCGGCg -3'
miRNA:   3'- ggGAGGaCgCGGGGCGU--CUGC-------------UGCCG- -5'
23743 3' -62.2 NC_005261.1 + 90391 0.67 0.593866
Target:  5'- cCCCgCCggcggggcugGCGCCCggCGCGgacuacgcgacguucGACGugGGCg -3'
miRNA:   3'- -GGGaGGa---------CGCGGG--GCGU---------------CUGCugCCG- -5'
23743 3' -62.2 NC_005261.1 + 63542 0.67 0.589984
Target:  5'- gCCUgCCcGCGCgccgugCCCGCuGGCG-CGGCc -3'
miRNA:   3'- gGGA-GGaCGCG------GGGCGuCUGCuGCCG- -5'
23743 3' -62.2 NC_005261.1 + 125310 0.67 0.589984
Target:  5'- aCCCgcggGCGCUCCGCGGcCu-CGGCg -3'
miRNA:   3'- -GGGaggaCGCGGGGCGUCuGcuGCCG- -5'
23743 3' -62.2 NC_005261.1 + 132709 0.67 0.589984
Target:  5'- gCCCgUCCcgGCGCCCUaccuCAuuGCGGCGGCc -3'
miRNA:   3'- -GGG-AGGa-CGCGGGGc---GUc-UGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 51151 0.67 0.589984
Target:  5'- gCCC-CCgGgGCCCUGCGG-CGGC-GCa -3'
miRNA:   3'- -GGGaGGaCgCGGGGCGUCuGCUGcCG- -5'
23743 3' -62.2 NC_005261.1 + 72523 0.67 0.589984
Target:  5'- aUCCUCCUugGCGgCUCGCu-GCG-CGGCa -3'
miRNA:   3'- -GGGAGGA--CGCgGGGCGucUGCuGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.