miRNA display CGI


Results 81 - 100 of 345 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23743 3' -62.2 NC_005261.1 + 124738 0.67 0.589984
Target:  5'- aCgCUCCU-CuCCCCGCAGcCGcaGCGGCc -3'
miRNA:   3'- -GgGAGGAcGcGGGGCGUCuGC--UGCCG- -5'
23743 3' -62.2 NC_005261.1 + 51151 0.67 0.589984
Target:  5'- gCCC-CCgGgGCCCUGCGG-CGGC-GCa -3'
miRNA:   3'- -GGGaGGaCgCGGGGCGUCuGCUGcCG- -5'
23743 3' -62.2 NC_005261.1 + 125310 0.67 0.589984
Target:  5'- aCCCgcggGCGCUCCGCGGcCu-CGGCg -3'
miRNA:   3'- -GGGaggaCGCGGGGCGUCuGcuGCCG- -5'
23743 3' -62.2 NC_005261.1 + 93539 0.67 0.589984
Target:  5'- gCCCgcgcGCGCCgCCcaguaGCGGuCGACGGCg -3'
miRNA:   3'- -GGGaggaCGCGG-GG-----CGUCuGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 29126 0.67 0.589984
Target:  5'- gCCCUggcgCCgggggGCGCCCCGCcGGACccgcccGCGGa -3'
miRNA:   3'- -GGGA----GGa----CGCGGGGCG-UCUGc-----UGCCg -5'
23743 3' -62.2 NC_005261.1 + 31773 0.67 0.589984
Target:  5'- ---aCCUGCGCgCCGCGGuGCugcccGCGGCg -3'
miRNA:   3'- gggaGGACGCGgGGCGUC-UGc----UGCCG- -5'
23743 3' -62.2 NC_005261.1 + 63542 0.67 0.589984
Target:  5'- gCCUgCCcGCGCgccgugCCCGCuGGCG-CGGCc -3'
miRNA:   3'- gGGA-GGaCGCG------GGGCGuCUGCuGCCG- -5'
23743 3' -62.2 NC_005261.1 + 115514 0.67 0.589984
Target:  5'- cCCCgcaccaCCUGCuGCaCCgagCGCAGcauCGGCGGCu -3'
miRNA:   3'- -GGGa-----GGACG-CG-GG---GCGUCu--GCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 35687 0.67 0.589014
Target:  5'- cCCCgCCgGCgaGCCCCGguGGgccgggggcucggUGGCGGCc -3'
miRNA:   3'- -GGGaGGaCG--CGGGGCguCU-------------GCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 83534 0.67 0.5803
Target:  5'- gCCCUCCagccccauggUGCGCgcgaagaacUCgGCGGGCGugcccGCGGCg -3'
miRNA:   3'- -GGGAGG----------ACGCG---------GGgCGUCUGC-----UGCCG- -5'
23743 3' -62.2 NC_005261.1 + 38909 0.67 0.5803
Target:  5'- uUCUCCgGCGCgcgggCCCGCgcgccaAGcCGGCGGCc -3'
miRNA:   3'- gGGAGGaCGCG-----GGGCG------UCuGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 119006 0.67 0.5803
Target:  5'- gCCUgCUGgGCCCgCGCcGACGaAUGaGCg -3'
miRNA:   3'- gGGAgGACgCGGG-GCGuCUGC-UGC-CG- -5'
23743 3' -62.2 NC_005261.1 + 17558 0.67 0.5803
Target:  5'- gCCCgCCguucgGCggugGCCuuGCGGGCGAgcUGGCa -3'
miRNA:   3'- -GGGaGGa----CG----CGGggCGUCUGCU--GCCG- -5'
23743 3' -62.2 NC_005261.1 + 24893 0.67 0.5803
Target:  5'- cCCCUugcCCggcggGCGCCCCuucaaGCccuCGGCGGCu -3'
miRNA:   3'- -GGGA---GGa----CGCGGGG-----CGucuGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 72416 0.67 0.5803
Target:  5'- cCCCgccCUUGCGCUcgCCGCGcuugcccccGGCGGgGGCg -3'
miRNA:   3'- -GGGa--GGACGCGG--GGCGU---------CUGCUgCCG- -5'
23743 3' -62.2 NC_005261.1 + 64930 0.67 0.5803
Target:  5'- -gCUCCUGCuCgCCGCccagGGGCGcguGCGGCa -3'
miRNA:   3'- ggGAGGACGcGgGGCG----UCUGC---UGCCG- -5'
23743 3' -62.2 NC_005261.1 + 59689 0.67 0.5803
Target:  5'- gCCCUCggccagcacGCGCUCCggGCAGACccgcccgccgGGCGGCa -3'
miRNA:   3'- -GGGAGga-------CGCGGGG--CGUCUG----------CUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 56745 0.67 0.5803
Target:  5'- gCCUUCCUGCGUgUCGCcuucaacACGcCGGCc -3'
miRNA:   3'- -GGGAGGACGCGgGGCGuc-----UGCuGCCG- -5'
23743 3' -62.2 NC_005261.1 + 113866 0.67 0.579333
Target:  5'- aCCUCgUGUGCUCCGgGugccaccuguagcGGCGacGCGGCg -3'
miRNA:   3'- gGGAGgACGCGGGGCgU-------------CUGC--UGCCG- -5'
23743 3' -62.2 NC_005261.1 + 45333 0.67 0.579333
Target:  5'- gCCCU-CUGCGUCgUGCAGAUguuccugGAgGGCu -3'
miRNA:   3'- -GGGAgGACGCGGgGCGUCUG-------CUgCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.