miRNA display CGI


Results 1 - 20 of 345 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23743 3' -62.2 NC_005261.1 + 10 0.69 0.486177
Target:  5'- cCCCUCgUGCagcggGCCCCGCGcGACccCGGg -3'
miRNA:   3'- -GGGAGgACG-----CGGGGCGU-CUGcuGCCg -5'
23743 3' -62.2 NC_005261.1 + 101 0.66 0.6387
Target:  5'- gCCC-CC-GgGCCCCGCcGcccGCGcCGGCg -3'
miRNA:   3'- -GGGaGGaCgCGGGGCGuC---UGCuGCCG- -5'
23743 3' -62.2 NC_005261.1 + 220 0.71 0.363656
Target:  5'- cCCCUggUGCucgcggGCCCCGCGagcgggcccggcugcGGCGGCGGCu -3'
miRNA:   3'- -GGGAggACG------CGGGGCGU---------------CUGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 347 0.67 0.558163
Target:  5'- gCCCgcagCCcgGCgcgGCCCgGCGGcgguggcggcggugGCGGCGGCg -3'
miRNA:   3'- -GGGa---GGa-CG---CGGGgCGUC--------------UGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 597 0.69 0.47804
Target:  5'- cCCCUCUguucgcggagggcgaGUGCCCgaCGCAGgggaugugGCGGCGGCc -3'
miRNA:   3'- -GGGAGGa--------------CGCGGG--GCGUC--------UGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 680 0.68 0.551472
Target:  5'- gCCCUCCgcgGaCGCUCCGCAu----CGGCg -3'
miRNA:   3'- -GGGAGGa--C-GCGGGGCGUcugcuGCCG- -5'
23743 3' -62.2 NC_005261.1 + 957 0.69 0.468186
Target:  5'- uCCCUCCga-G-CCCGUAGAgCGGCGGg -3'
miRNA:   3'- -GGGAGGacgCgGGGCGUCU-GCUGCCg -5'
23743 3' -62.2 NC_005261.1 + 1286 0.68 0.513757
Target:  5'- gCCCaggCCggcgGgGCuCCCGUcgccGGCGGCGGCa -3'
miRNA:   3'- -GGGa--GGa---CgCG-GGGCGu---CUGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 1391 0.72 0.338353
Target:  5'- gCCacgCCggGCGCCgcggCCGCGG-CGGCGGCg -3'
miRNA:   3'- -GGga-GGa-CGCGG----GGCGUCuGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 2365 0.68 0.495295
Target:  5'- aUCCaggCCacGCGCCgCCGCAG-CGGCGcGCu -3'
miRNA:   3'- -GGGa--GGa-CGCGG-GGCGUCuGCUGC-CG- -5'
23743 3' -62.2 NC_005261.1 + 2409 0.7 0.416392
Target:  5'- gCCCgc--GgGCCCCGCGcGGCGGCGGg -3'
miRNA:   3'- -GGGaggaCgCGGGGCGU-CUGCUGCCg -5'
23743 3' -62.2 NC_005261.1 + 2726 0.68 0.521221
Target:  5'- cCCCggccgacuugcgCUUGCGCCgCgGCGGGCcgucGCGGCg -3'
miRNA:   3'- -GGGa-----------GGACGCGG-GgCGUCUGc---UGCCG- -5'
23743 3' -62.2 NC_005261.1 + 3151 0.72 0.338353
Target:  5'- cCCCgUCCgagGC-CCCgGCGG-CGGCGGCc -3'
miRNA:   3'- -GGG-AGGa--CGcGGGgCGUCuGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 3339 0.69 0.47714
Target:  5'- aCCCgcgCCgcgGCGCCCgGC--GCGcCGGCc -3'
miRNA:   3'- -GGGa--GGa--CGCGGGgCGucUGCuGCCG- -5'
23743 3' -62.2 NC_005261.1 + 3522 0.66 0.64553
Target:  5'- gCCUCCaGCGCggcggccgccucggCgCGCAGcGCGGCGGg -3'
miRNA:   3'- gGGAGGaCGCG--------------GgGCGUC-UGCUGCCg -5'
23743 3' -62.2 NC_005261.1 + 3762 0.7 0.416392
Target:  5'- gCCUCUaGCGCCUCGCGGcaggccgcaGCGcaGCGGUc -3'
miRNA:   3'- gGGAGGaCGCGGGGCGUC---------UGC--UGCCG- -5'
23743 3' -62.2 NC_005261.1 + 3814 0.66 0.6582
Target:  5'- gCCgCUCgC-GCGCUgCCGCGGGCccgggcgcuGGCGGCa -3'
miRNA:   3'- -GG-GAG-GaCGCGG-GGCGUCUG---------CUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 3858 0.66 0.648456
Target:  5'- ---gCCgGCGCCgCGCGGcCGGCGaGCa -3'
miRNA:   3'- gggaGGaCGCGGgGCGUCuGCUGC-CG- -5'
23743 3' -62.2 NC_005261.1 + 4183 0.66 0.652355
Target:  5'- gCCCgcgagCUUcGCGCUCUGCAGccaggccauggcgucGCGGCGcGCg -3'
miRNA:   3'- -GGGa----GGA-CGCGGGGCGUC---------------UGCUGC-CG- -5'
23743 3' -62.2 NC_005261.1 + 4360 0.7 0.391041
Target:  5'- gCCCUcgcgagugucgCCcGCGCCgCCGaagcgcacgcggcCGGGCGGCGGCg -3'
miRNA:   3'- -GGGA-----------GGaCGCGG-GGC-------------GUCUGCUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.