miRNA display CGI


Results 21 - 40 of 345 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23743 3' -62.2 NC_005261.1 + 4456 0.7 0.433272
Target:  5'- gCCCUCCagcggcgGCGgCCCGUcgcgcGGCGccGCGGCg -3'
miRNA:   3'- -GGGAGGa------CGCgGGGCGu----CUGC--UGCCG- -5'
23743 3' -62.2 NC_005261.1 + 4509 0.74 0.231315
Target:  5'- cCCCagUCgcGCGCCCgCGCGGGCGccGCGGCg -3'
miRNA:   3'- -GGGa-GGa-CGCGGG-GCGUCUGC--UGCCG- -5'
23743 3' -62.2 NC_005261.1 + 4649 0.68 0.495295
Target:  5'- uCCCuaaaUCCaGUGUCggCCGCGG-CGGCGGCg -3'
miRNA:   3'- -GGG----AGGaCGCGG--GGCGUCuGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 4700 0.71 0.368255
Target:  5'- aCCCUCgCgucuuugGCaucgGCCCCGgAGuCGGCGGCc -3'
miRNA:   3'- -GGGAG-Ga------CG----CGGGGCgUCuGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 4819 0.77 0.146922
Target:  5'- uUCCUCC-GCGUUgggCGCAGGCGGCGGCg -3'
miRNA:   3'- -GGGAGGaCGCGGg--GCGUCUGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 4943 0.67 0.561038
Target:  5'- gCCCgcgCCgcggcccagGCGCCCC-CGGcCG-CGGCg -3'
miRNA:   3'- -GGGa--GGa--------CGCGGGGcGUCuGCuGCCG- -5'
23743 3' -62.2 NC_005261.1 + 5475 0.67 0.574505
Target:  5'- gCCC-CCgcuaucgcgcGCGCCgggggguagcuggggCCGCGGcaGCGGCGGCg -3'
miRNA:   3'- -GGGaGGa---------CGCGG---------------GGCGUC--UGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 5979 0.68 0.495295
Target:  5'- cUCCUCUgccGCGCgucuccgcuccuCCCGCGG-CGAgGGCu -3'
miRNA:   3'- -GGGAGGa--CGCG------------GGGCGUCuGCUgCCG- -5'
23743 3' -62.2 NC_005261.1 + 6068 0.7 0.433272
Target:  5'- gCC-CCU-CGUCCCGaCGG-CGGCGGCa -3'
miRNA:   3'- gGGaGGAcGCGGGGC-GUCuGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 6241 0.74 0.242257
Target:  5'- gCCCggggagggCCUGCccGCCCCGCGG--GGCGGCc -3'
miRNA:   3'- -GGGa-------GGACG--CGGGGCGUCugCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 9604 0.66 0.6582
Target:  5'- cCCCgCCUcGgGCCCgggguggGCAGGCGGgGGUg -3'
miRNA:   3'- -GGGaGGA-CgCGGGg------CGUCUGCUgCCG- -5'
23743 3' -62.2 NC_005261.1 + 10094 0.81 0.080621
Target:  5'- aCCC-CCgccGCGCCCCgGCAG-CGGCGGCg -3'
miRNA:   3'- -GGGaGGa--CGCGGGG-CGUCuGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 10884 0.71 0.35308
Target:  5'- cCCCgagCCcgGCGCCaaCgGCGG-CGGCGGCa -3'
miRNA:   3'- -GGGa--GGa-CGCGG--GgCGUCuGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 10939 0.68 0.531552
Target:  5'- cCCCUUCUcGCggggcccGCCCC-CAGacGCGugGGCc -3'
miRNA:   3'- -GGGAGGA-CG-------CGGGGcGUC--UGCugCCG- -5'
23743 3' -62.2 NC_005261.1 + 11920 0.69 0.47714
Target:  5'- gCCCggCCggcggcugcgGCGgCCCGCGccGCGGCGGCu -3'
miRNA:   3'- -GGGa-GGa---------CGCgGGGCGUc-UGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 12496 0.7 0.416392
Target:  5'- aCUCUCCaUG-GCCCCcCGGGCGACcGCg -3'
miRNA:   3'- -GGGAGG-ACgCGGGGcGUCUGCUGcCG- -5'
23743 3' -62.2 NC_005261.1 + 12741 0.69 0.468186
Target:  5'- gCCC-CCUGggcggGCCCggcgagguCGUAGGCGGCGGUg -3'
miRNA:   3'- -GGGaGGACg----CGGG--------GCGUCUGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 13064 0.69 0.468186
Target:  5'- cCCCUgCCggGCGCgUCCGCcggcccgucggcGGGCGGCGGg -3'
miRNA:   3'- -GGGA-GGa-CGCG-GGGCG------------UCUGCUGCCg -5'
23743 3' -62.2 NC_005261.1 + 14816 0.67 0.576435
Target:  5'- aCgUCCgcggcuuauagaUGCGCCgggagcacggcaGCAGGCGGCGGCg -3'
miRNA:   3'- gGgAGG------------ACGCGGgg----------CGUCUGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 15138 0.68 0.492551
Target:  5'- -aCUCCUuCGCCCCcgccguccGCGGugggggugggcguaGCGGCGGCg -3'
miRNA:   3'- ggGAGGAcGCGGGG--------CGUC--------------UGCUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.