miRNA display CGI


Results 41 - 60 of 345 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23743 3' -62.2 NC_005261.1 + 15383 0.68 0.50449
Target:  5'- gCCCUCg-GCGCCgCCGUcGAugcCGACGcGCa -3'
miRNA:   3'- -GGGAGgaCGCGG-GGCGuCU---GCUGC-CG- -5'
23743 3' -62.2 NC_005261.1 + 16426 0.66 0.61918
Target:  5'- gCCC-CCU-CGa-CgGCGGGCGGCGGCu -3'
miRNA:   3'- -GGGaGGAcGCggGgCGUCUGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 17558 0.67 0.5803
Target:  5'- gCCCgCCguucgGCggugGCCuuGCGGGCGAgcUGGCa -3'
miRNA:   3'- -GGGaGGa----CG----CGGggCGUCUGCU--GCCG- -5'
23743 3' -62.2 NC_005261.1 + 18503 0.67 0.589984
Target:  5'- cCCCgUUCUGguagacccaGCCCgCGUcaauGACGGCGGCg -3'
miRNA:   3'- -GGG-AGGACg--------CGGG-GCGu---CUGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 19475 0.7 0.408105
Target:  5'- uCCgUCUUGaCGUCCCGaUGGGCGAucCGGCg -3'
miRNA:   3'- -GGgAGGAC-GCGGGGC-GUCUGCU--GCCG- -5'
23743 3' -62.2 NC_005261.1 + 19933 0.68 0.513757
Target:  5'- gCCCUCgCUaGCGUCCUggGCGGGgGugGGg -3'
miRNA:   3'- -GGGAG-GA-CGCGGGG--CGUCUgCugCCg -5'
23743 3' -62.2 NC_005261.1 + 20534 0.73 0.283969
Target:  5'- gUCUCCgaccGCGCUCUGCuGGACGugGCGGCg -3'
miRNA:   3'- gGGAGGa---CGCGGGGCG-UCUGC--UGCCG- -5'
23743 3' -62.2 NC_005261.1 + 22724 0.66 0.648456
Target:  5'- gCCggaggaCCaGCGCCagucgggCGCgGGGCGGCGGCg -3'
miRNA:   3'- gGGa-----GGaCGCGGg------GCG-UCUGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 23167 0.67 0.561038
Target:  5'- gCCCggcagGCGCgCCGgGGGCGACaGCg -3'
miRNA:   3'- -GGGagga-CGCGgGGCgUCUGCUGcCG- -5'
23743 3' -62.2 NC_005261.1 + 24424 0.67 0.561038
Target:  5'- aUCCUCggUUGCGgUCCGCGG-CGAUGGa -3'
miRNA:   3'- -GGGAG--GACGCgGGGCGUCuGCUGCCg -5'
23743 3' -62.2 NC_005261.1 + 24576 0.71 0.376008
Target:  5'- gCCCgauuugCCUGCacccGCCCC-CAGuccCGGCGGCc -3'
miRNA:   3'- -GGGa-----GGACG----CGGGGcGUCu--GCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 24893 0.67 0.5803
Target:  5'- cCCCUugcCCggcggGCGCCCCuucaaGCccuCGGCGGCu -3'
miRNA:   3'- -GGGA---GGa----CGCGGGG-----CGucuGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 28180 0.71 0.376008
Target:  5'- gUCUCgCUGCGCgCCGaAGcCGGCGGCc -3'
miRNA:   3'- gGGAG-GACGCGgGGCgUCuGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 28415 0.68 0.529668
Target:  5'- cUCCUCCUcuccagggacccgcGCGCaCCGCGGcCGGCcauGGCg -3'
miRNA:   3'- -GGGAGGA--------------CGCGgGGCGUCuGCUG---CCG- -5'
23743 3' -62.2 NC_005261.1 + 28738 0.7 0.399921
Target:  5'- gCCCUCCgagGCCCCagaGGACGccGCGGCc -3'
miRNA:   3'- -GGGAGGacgCGGGGcg-UCUGC--UGCCG- -5'
23743 3' -62.2 NC_005261.1 + 28766 0.66 0.6582
Target:  5'- nCCgggggcgCCUGgGCCgcggCGCGGGCGcucGCGGCc -3'
miRNA:   3'- gGGa------GGACgCGGg---GCGUCUGC---UGCCG- -5'
23743 3' -62.2 NC_005261.1 + 28894 0.68 0.541956
Target:  5'- gCCgCCUGCGCCCaaCGCGGAgGAaguugacgcCGGg -3'
miRNA:   3'- gGGaGGACGCGGG--GCGUCUgCU---------GCCg -5'
23743 3' -62.2 NC_005261.1 + 29126 0.67 0.589984
Target:  5'- gCCCUggcgCCgggggGCGCCCCGCcGGACccgcccGCGGa -3'
miRNA:   3'- -GGGA----GGa----CGCGGGGCG-UCUGc-----UGCCg -5'
23743 3' -62.2 NC_005261.1 + 29190 0.71 0.376008
Target:  5'- gCCCUcgCCgcgGCGCCCgCGCGGGCGcGCGa- -3'
miRNA:   3'- -GGGA--GGa--CGCGGG-GCGUCUGC-UGCcg -5'
23743 3' -62.2 NC_005261.1 + 30057 0.69 0.44186
Target:  5'- gCCgcggCCUGCGCUCC--AGACGcgcuaGCGGCg -3'
miRNA:   3'- gGGa---GGACGCGGGGcgUCUGC-----UGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.