miRNA display CGI


Results 61 - 80 of 345 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23743 3' -62.2 NC_005261.1 + 30173 0.66 0.667925
Target:  5'- gCCCgccgCgCUGCGCgCCG-AGGCGGCcGCc -3'
miRNA:   3'- -GGGa---G-GACGCGgGGCgUCUGCUGcCG- -5'
23743 3' -62.2 NC_005261.1 + 30921 0.68 0.536272
Target:  5'- cCCCUCCcgGCcgccggcgcaGCCCCucggggGCGGgccucgaggcccgccGCGACGGCc -3'
miRNA:   3'- -GGGAGGa-CG----------CGGGG------CGUC---------------UGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 31096 0.76 0.174145
Target:  5'- cCCCaugCCgcccgGCgGCCCCGCcgccGACGGCGGCu -3'
miRNA:   3'- -GGGa--GGa----CG-CGGGGCGu---CUGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 31193 0.67 0.599697
Target:  5'- gCCUaCUGcCGCCCCGaGGuCG-CGGCg -3'
miRNA:   3'- gGGAgGAC-GCGGGGCgUCuGCuGCCG- -5'
23743 3' -62.2 NC_005261.1 + 31334 0.71 0.383871
Target:  5'- gCCgCCaGCGCgCCGCu-GCGGCGGCg -3'
miRNA:   3'- gGGaGGaCGCGgGGCGucUGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 31666 0.75 0.215685
Target:  5'- cCUCUgCCUGCgGCUggCCGCGGcGCGGCGGCg -3'
miRNA:   3'- -GGGA-GGACG-CGG--GGCGUC-UGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 31773 0.67 0.589984
Target:  5'- ---aCCUGCGCgCCGCGGuGCugcccGCGGCg -3'
miRNA:   3'- gggaGGACGCGgGGCGUC-UGc----UGCCG- -5'
23743 3' -62.2 NC_005261.1 + 31917 0.66 0.628939
Target:  5'- aCC-CCgggGCGCCgCCGCuGGGCucugccGCGGCg -3'
miRNA:   3'- gGGaGGa--CGCGG-GGCG-UCUGc-----UGCCG- -5'
23743 3' -62.2 NC_005261.1 + 32308 0.67 0.599697
Target:  5'- gCCC-CC-GcCGCCgCCGCGGcCG-CGGCg -3'
miRNA:   3'- -GGGaGGaC-GCGG-GGCGUCuGCuGCCG- -5'
23743 3' -62.2 NC_005261.1 + 32402 0.66 0.6582
Target:  5'- uCCCggagCgC-GUGCCgCCGCcGGCGACGGg -3'
miRNA:   3'- -GGGa---G-GaCGCGG-GGCGuCUGCUGCCg -5'
23743 3' -62.2 NC_005261.1 + 32483 0.67 0.561038
Target:  5'- gCUUCCcGgGgCCgGC-GACGGCGGCa -3'
miRNA:   3'- gGGAGGaCgCgGGgCGuCUGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 32601 0.71 0.376008
Target:  5'- gUCCUCCUcgucguccGCGUCCU-CGGACGACGaGCc -3'
miRNA:   3'- -GGGAGGA--------CGCGGGGcGUCUGCUGC-CG- -5'
23743 3' -62.2 NC_005261.1 + 33234 0.68 0.513757
Target:  5'- uCCCUCCUcuccuccccGCGCcauCCCGCcGGCcgucGCGGCc -3'
miRNA:   3'- -GGGAGGA---------CGCG---GGGCGuCUGc---UGCCG- -5'
23743 3' -62.2 NC_005261.1 + 33486 0.67 0.599697
Target:  5'- gCCCgCUcGCGgggCCCGCgagcaccagGGGCGGCGGCg -3'
miRNA:   3'- -GGGaGGaCGCg--GGGCG---------UCUGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 33572 0.69 0.468186
Target:  5'- gCCagcCCUGCcaGCCCCGCGagcaccaggggcGGCGcCGGCg -3'
miRNA:   3'- -GGga-GGACG--CGGGGCGU------------CUGCuGCCG- -5'
23743 3' -62.2 NC_005261.1 + 33777 0.74 0.242257
Target:  5'- gCCCgcggcgagCgCUGgGCCCCGCgcGGGCGGCGGg -3'
miRNA:   3'- -GGGa-------G-GACgCGGGGCG--UCUGCUGCCg -5'
23743 3' -62.2 NC_005261.1 + 34363 0.72 0.324077
Target:  5'- gCCgggcgCCgcgcgGCGCCgCgCGCAGACG-CGGCg -3'
miRNA:   3'- gGGa----GGa----CGCGG-G-GCGUCUGCuGCCG- -5'
23743 3' -62.2 NC_005261.1 + 34719 0.66 0.667925
Target:  5'- gCCUCagcggucgGCGCCCC-CuGGCGGCcGCg -3'
miRNA:   3'- gGGAGga------CGCGGGGcGuCUGCUGcCG- -5'
23743 3' -62.2 NC_005261.1 + 35047 0.67 0.599697
Target:  5'- gCCCUaacgGCGgCCgCGCGG-CGGCGGUc -3'
miRNA:   3'- -GGGAgga-CGCgGG-GCGUCuGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 35073 0.66 0.662092
Target:  5'- nUCUCC-GCGCCCCcucgcccucggagccGCGGugaGCGGCGaGCc -3'
miRNA:   3'- gGGAGGaCGCGGGG---------------CGUC---UGCUGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.