miRNA display CGI


Results 1 - 20 of 345 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23743 3' -62.2 NC_005261.1 + 138018 0.67 0.558163
Target:  5'- gCCCgcagCCcgGCgcgGCCCgGCGGcgguggcggcggugGCGGCGGCg -3'
miRNA:   3'- -GGGa---GGa-CG---CGGGgCGUC--------------UGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 137903 0.71 0.363656
Target:  5'- cCCCUggUGCucgcggGCCCCGCGagcgggcccggcugcGGCGGCGGCu -3'
miRNA:   3'- -GGGAggACG------CGGGGCGU---------------CUGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 137784 0.66 0.6387
Target:  5'- gCCC-CC-GgGCCCCGCcGcccGCGcCGGCg -3'
miRNA:   3'- -GGGaGGaCgCGGGGCGuC---UGCuGCCG- -5'
23743 3' -62.2 NC_005261.1 + 137694 0.69 0.486177
Target:  5'- cCCCUCgUGCagcggGCCCCGCGcGACccCGGg -3'
miRNA:   3'- -GGGAGgACG-----CGGGGCGU-CUGcuGCCg -5'
23743 3' -62.2 NC_005261.1 + 135670 0.66 0.648456
Target:  5'- nCCCUCgcucgaggagcuCUGCGCCgCGCGG-CGGCuaaGCc -3'
miRNA:   3'- -GGGAG------------GACGCGGgGCGUCuGCUGc--CG- -5'
23743 3' -62.2 NC_005261.1 + 135634 0.69 0.47714
Target:  5'- gCCCUUCaUGCGCUgcuaccugCGCGGGCGcggGCGGCc -3'
miRNA:   3'- -GGGAGG-ACGCGGg-------GCGUCUGC---UGCCG- -5'
23743 3' -62.2 NC_005261.1 + 135120 0.68 0.495295
Target:  5'- aCC-CC-GCGUCuCCGCAGcGCGGCGGg -3'
miRNA:   3'- gGGaGGaCGCGG-GGCGUC-UGCUGCCg -5'
23743 3' -62.2 NC_005261.1 + 134993 0.69 0.447059
Target:  5'- gCCgCCgggGCGCCCCuggcgcgGCGGgcccgcacgcggccGCGGCGGCg -3'
miRNA:   3'- gGGaGGa--CGCGGGG-------CGUC--------------UGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 134352 0.73 0.265432
Target:  5'- gCCC-CC-GCGCCgCCGCgcGGGgGGCGGCg -3'
miRNA:   3'- -GGGaGGaCGCGG-GGCG--UCUgCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 133838 0.66 0.628939
Target:  5'- gCCgCgUGCGCgCCGUGGcCGGCGcGCg -3'
miRNA:   3'- gGGaGgACGCGgGGCGUCuGCUGC-CG- -5'
23743 3' -62.2 NC_005261.1 + 133783 0.72 0.338353
Target:  5'- gCCCUCgUGCGgcgcaUCCCGCccGGGCugcucGACGGCg -3'
miRNA:   3'- -GGGAGgACGC-----GGGGCG--UCUG-----CUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 133376 0.67 0.599697
Target:  5'- gCUgCCUGCGCgcggCCCaCGGGCGcGCGGCc -3'
miRNA:   3'- gGGaGGACGCG----GGGcGUCUGC-UGCCG- -5'
23743 3' -62.2 NC_005261.1 + 133236 0.7 0.399921
Target:  5'- gCCCUaCaugGCGgagcacuaCCCGCAGGCGGCGcGCg -3'
miRNA:   3'- -GGGA-Gga-CGCg-------GGGCGUCUGCUGC-CG- -5'
23743 3' -62.2 NC_005261.1 + 132882 0.69 0.440997
Target:  5'- gCCCUUCUucggcaagccGgGCgCCGCGGGCGgcgccgaGCGGCg -3'
miRNA:   3'- -GGGAGGA----------CgCGgGGCGUCUGC-------UGCCG- -5'
23743 3' -62.2 NC_005261.1 + 132709 0.67 0.589984
Target:  5'- gCCCgUCCcgGCGCCCUaccuCAuuGCGGCGGCc -3'
miRNA:   3'- -GGG-AGGa-CGCGGGGc---GUc-UGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 132607 0.66 0.662092
Target:  5'- nCCCggcgagCCgccagggggcgcugGCGCCgaggaCGCGGGCG-CGGCg -3'
miRNA:   3'- -GGGa-----GGa-------------CGCGGg----GCGUCUGCuGCCG- -5'
23743 3' -62.2 NC_005261.1 + 132582 0.7 0.424782
Target:  5'- aCgUCg-GCGCgCCCGCGGACGccCGGCc -3'
miRNA:   3'- gGgAGgaCGCG-GGGCGUCUGCu-GCCG- -5'
23743 3' -62.2 NC_005261.1 + 132467 0.66 0.615279
Target:  5'- gCCCUCCgcgccggcaGCGCCUCGCcguccugGGACGcgcccgaccgcgacGCGGg -3'
miRNA:   3'- -GGGAGGa--------CGCGGGGCG-------UCUGC--------------UGCCg -5'
23743 3' -62.2 NC_005261.1 + 132146 0.74 0.231315
Target:  5'- gCCCUCCUccucgagcGCGCCgCCGCugcaggcagcgcGGGCGGgGGCc -3'
miRNA:   3'- -GGGAGGA--------CGCGG-GGCG------------UCUGCUgCCG- -5'
23743 3' -62.2 NC_005261.1 + 132080 0.66 0.61918
Target:  5'- gCCgCCgucGcCGCUgCCGCGGAgGGCGGCc -3'
miRNA:   3'- gGGaGGa--C-GCGG-GGCGUCUgCUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.