miRNA display CGI


Results 21 - 40 of 345 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23743 3' -62.2 NC_005261.1 + 131878 0.66 0.648456
Target:  5'- gCUggCgGcCGCCgCCGCAcGCGACGGCg -3'
miRNA:   3'- gGGagGaC-GCGG-GGCGUcUGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 131803 0.7 0.433272
Target:  5'- gCCCgccgcgCCUgacggcGCGCCgCCGCuuGACG-CGGCg -3'
miRNA:   3'- -GGGa-----GGA------CGCGG-GGCGu-CUGCuGCCG- -5'
23743 3' -62.2 NC_005261.1 + 131571 0.7 0.433272
Target:  5'- gCCCggCUGCcCCCCGC-GACGGCcgaGGCc -3'
miRNA:   3'- -GGGagGACGcGGGGCGuCUGCUG---CCG- -5'
23743 3' -62.2 NC_005261.1 + 131442 0.7 0.433272
Target:  5'- gCCCcCCUugcgccGCGCCUCGCGGGCGccucccgccuccGCGaGCg -3'
miRNA:   3'- -GGGaGGA------CGCGGGGCGUCUGC------------UGC-CG- -5'
23743 3' -62.2 NC_005261.1 + 131169 0.66 0.6387
Target:  5'- gCCUUCUGCuGCCgCaGCGGcuACGcccGCGGCg -3'
miRNA:   3'- gGGAGGACG-CGGgG-CGUC--UGC---UGCCG- -5'
23743 3' -62.2 NC_005261.1 + 130848 0.68 0.532495
Target:  5'- aCCUUgCgcgcGCGCCCgGcCGGGCGccGCGGCc -3'
miRNA:   3'- -GGGAgGa---CGCGGGgC-GUCUGC--UGCCG- -5'
23743 3' -62.2 NC_005261.1 + 130608 0.66 0.648456
Target:  5'- gCCCgucuuugCCUGCGCCUucaacagcgCGCGgGGCGcGCGuGCg -3'
miRNA:   3'- -GGGa------GGACGCGGG---------GCGU-CUGC-UGC-CG- -5'
23743 3' -62.2 NC_005261.1 + 130453 0.66 0.637723
Target:  5'- gUCUCCUacgacuggcccgaGCGgCUCGCGGcgugccuCGGCGGCg -3'
miRNA:   3'- gGGAGGA-------------CGCgGGGCGUCu------GCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 130210 0.68 0.508188
Target:  5'- gCCUCCUGCaggcggaagagcgucGgCCCGCucAGGCGccgcgccaGCGGCu -3'
miRNA:   3'- gGGAGGACG---------------CgGGGCG--UCUGC--------UGCCG- -5'
23743 3' -62.2 NC_005261.1 + 130000 0.66 0.667925
Target:  5'- gCgUCCUGUauguGCUUCGuCAcGACGGCGGUg -3'
miRNA:   3'- gGgAGGACG----CGGGGC-GU-CUGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 129930 0.74 0.23893
Target:  5'- gCCCUCCacgGCGCCCaccgagugguacaucUGCAGcAgGGCGGCc -3'
miRNA:   3'- -GGGAGGa--CGCGGG---------------GCGUC-UgCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 129816 0.68 0.510969
Target:  5'- gCCCgcgcCCUGCGCCCggaugcccagCGCGcgcuccagcaccgcGACGuCGGCc -3'
miRNA:   3'- -GGGa---GGACGCGGG----------GCGU--------------CUGCuGCCG- -5'
23743 3' -62.2 NC_005261.1 + 129632 0.66 0.648456
Target:  5'- gCCUUUgcagGCgGCaaCGguGGCGGCGGCg -3'
miRNA:   3'- gGGAGGa---CG-CGggGCguCUGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 129302 0.73 0.265432
Target:  5'- gCCC-CCgGCGCCCCGCGccuGCGcUGGCg -3'
miRNA:   3'- -GGGaGGaCGCGGGGCGUc--UGCuGCCG- -5'
23743 3' -62.2 NC_005261.1 + 127905 0.66 0.6582
Target:  5'- gCCCgggCCUGgGCuugggcucgggCCCGCucGAUG-CGGCg -3'
miRNA:   3'- -GGGa--GGACgCG-----------GGGCGu-CUGCuGCCG- -5'
23743 3' -62.2 NC_005261.1 + 127257 0.7 0.422255
Target:  5'- cCCCUCCaGCGCuacggccgggcccgCCCGCc-GCGGgGGCa -3'
miRNA:   3'- -GGGAGGaCGCG--------------GGGCGucUGCUgCCG- -5'
23743 3' -62.2 NC_005261.1 + 127079 0.71 0.360612
Target:  5'- gCCgCCgccGCGCCgCCGCA-AUGACGGCu -3'
miRNA:   3'- gGGaGGa--CGCGG-GGCGUcUGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 126995 0.7 0.399108
Target:  5'- aCCgUCagGgGCCgaccccgCCGCAGGCGGCGGCc -3'
miRNA:   3'- -GGgAGgaCgCGG-------GGCGUCUGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 126190 0.66 0.648456
Target:  5'- aCCUCgaccaGCCCCGCgcGGACcaGCGGCa -3'
miRNA:   3'- gGGAGgacg-CGGGGCG--UCUGc-UGCCG- -5'
23743 3' -62.2 NC_005261.1 + 126056 0.66 0.667925
Target:  5'- cCCgCUCCgGCGCcagccgCCCGCcGGCcuCGGCg -3'
miRNA:   3'- -GG-GAGGaCGCG------GGGCGuCUGcuGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.