miRNA display CGI


Results 41 - 60 of 345 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23743 3' -62.2 NC_005261.1 + 125310 0.67 0.589984
Target:  5'- aCCCgcggGCGCUCCGCGGcCu-CGGCg -3'
miRNA:   3'- -GGGaggaCGCGGGGCGUCuGcuGCCG- -5'
23743 3' -62.2 NC_005261.1 + 125010 0.69 0.468186
Target:  5'- gUCCgggCCgUGCGCUCCaGCAGGCucCGGUg -3'
miRNA:   3'- -GGGa--GG-ACGCGGGG-CGUCUGcuGCCG- -5'
23743 3' -62.2 NC_005261.1 + 124738 0.67 0.589984
Target:  5'- aCgCUCCU-CuCCCCGCAGcCGcaGCGGCc -3'
miRNA:   3'- -GgGAGGAcGcGGGGCGUCuGC--UGCCG- -5'
23743 3' -62.2 NC_005261.1 + 123050 0.69 0.471757
Target:  5'- cCCUUCuCUGCccgccgcucgaugagGCCCCGagAGGCGGcCGGCc -3'
miRNA:   3'- -GGGAG-GACG---------------CGGGGCg-UCUGCU-GCCG- -5'
23743 3' -62.2 NC_005261.1 + 122990 0.68 0.522157
Target:  5'- gCCUCCUGCaggGCCacuacggCCGCGGcCG-UGGCg -3'
miRNA:   3'- gGGAGGACG---CGG-------GGCGUCuGCuGCCG- -5'
23743 3' -62.2 NC_005261.1 + 121689 0.71 0.360612
Target:  5'- gCCCUCCagguUGCGCauggaggCGUAGAcgcCGACGGCg -3'
miRNA:   3'- -GGGAGG----ACGCGgg-----GCGUCU---GCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 121376 0.79 0.117634
Target:  5'- -aCUgCagGCGCCCCGCGG-CGGCGGCg -3'
miRNA:   3'- ggGAgGa-CGCGGGGCGUCuGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 121250 0.67 0.561038
Target:  5'- -gCUCCgacucgGgGuCCgCCGCAGACGggGCGGCc -3'
miRNA:   3'- ggGAGGa-----CgC-GG-GGCGUCUGC--UGCCG- -5'
23743 3' -62.2 NC_005261.1 + 120351 0.71 0.35308
Target:  5'- gUCUcCCUGCGCUggaCGguGcGCGACGGCg -3'
miRNA:   3'- gGGA-GGACGCGGg--GCguC-UGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 119856 0.7 0.408105
Target:  5'- cCCCUgaCCgUGCGCUcccugaccgCCGCAGcCGAgGGCg -3'
miRNA:   3'- -GGGA--GG-ACGCGG---------GGCGUCuGCUgCCG- -5'
23743 3' -62.2 NC_005261.1 + 119737 0.69 0.468186
Target:  5'- cCCUUCCcgcGCGCCCCGCccAUGugcuguuuGCGGCc -3'
miRNA:   3'- -GGGAGGa--CGCGGGGCGucUGC--------UGCCG- -5'
23743 3' -62.2 NC_005261.1 + 119006 0.67 0.5803
Target:  5'- gCCUgCUGgGCCCgCGCcGACGaAUGaGCg -3'
miRNA:   3'- gGGAgGACgCGGG-GCGuCUGC-UGC-CG- -5'
23743 3' -62.2 NC_005261.1 + 118900 0.7 0.433272
Target:  5'- gCUgguggCCUGCGUCuggguccggcgCCGCGGGCG-CGGCg -3'
miRNA:   3'- gGGa----GGACGCGG-----------GGCGUCUGCuGCCG- -5'
23743 3' -62.2 NC_005261.1 + 118756 0.73 0.286516
Target:  5'- aCCUCUguUGCGCUacgcgcgcgccgacgCUGCAGACGGCGcGCu -3'
miRNA:   3'- gGGAGG--ACGCGG---------------GGCGUCUGCUGC-CG- -5'
23743 3' -62.2 NC_005261.1 + 118710 0.68 0.532495
Target:  5'- --gUCCUGCucaGCgUCGCGGGCGggcACGGCg -3'
miRNA:   3'- gggAGGACG---CGgGGCGUCUGC---UGCCG- -5'
23743 3' -62.2 NC_005261.1 + 118544 0.68 0.529668
Target:  5'- cCCCUgCggcGCGCgcgaggacgccgugCCCGCGcgcGCGGCGGCg -3'
miRNA:   3'- -GGGAgGa--CGCG--------------GGGCGUc--UGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 118424 0.71 0.360612
Target:  5'- gCUggCUGuCGCCgCCGCGGACGccgccGCGGCg -3'
miRNA:   3'- gGGagGAC-GCGG-GGCGUCUGC-----UGCCG- -5'
23743 3' -62.2 NC_005261.1 + 118199 0.71 0.368255
Target:  5'- cCCCgcgCCUgccGCGCUgCGCGGGgcgcUGACGGCc -3'
miRNA:   3'- -GGGa--GGA---CGCGGgGCGUCU----GCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 118039 0.68 0.513757
Target:  5'- gCCCggCCgcgaCGCCCgCGCuGGCGgccGCGGCa -3'
miRNA:   3'- -GGGa-GGac--GCGGG-GCGuCUGC---UGCCG- -5'
23743 3' -62.2 NC_005261.1 + 117655 0.7 0.424782
Target:  5'- cCCCcCCgcuaaGCGCCCCGCcgcgcccggccGGGCccGCGGCg -3'
miRNA:   3'- -GGGaGGa----CGCGGGGCG-----------UCUGc-UGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.