miRNA display CGI


Results 1 - 20 of 345 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23743 3' -62.2 NC_005261.1 + 71459 0.66 0.668896
Target:  5'- gCCUCCcggagcaucaggaagGCcUCCCGguGcGCGGCGGCc -3'
miRNA:   3'- gGGAGGa--------------CGcGGGGCguC-UGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 31096 0.76 0.174145
Target:  5'- cCCCaugCCgcccgGCgGCCCCGCcgccGACGGCGGCu -3'
miRNA:   3'- -GGGa--GGa----CG-CGGGGCGu---CUGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 56412 0.76 0.178383
Target:  5'- gCCCUgCgcuucgcgGCGCaCCCGCcugcggAGGCGGCGGCg -3'
miRNA:   3'- -GGGAgGa-------CGCG-GGGCG------UCUGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 31666 0.75 0.215685
Target:  5'- cCUCUgCCUGCgGCUggCCGCGGcGCGGCGGCg -3'
miRNA:   3'- -GGGA-GGACG-CGG--GGCGUC-UGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 76215 0.75 0.215685
Target:  5'- gCCgcgCCUGCGCCgCGCGcuuGACGagacGCGGCg -3'
miRNA:   3'- gGGa--GGACGCGGgGCGU---CUGC----UGCCG- -5'
23743 3' -62.2 NC_005261.1 + 55273 0.75 0.220792
Target:  5'- gCCC-CCUgGCGCgCCGgAGGCGGgGGCg -3'
miRNA:   3'- -GGGaGGA-CGCGgGGCgUCUGCUgCCG- -5'
23743 3' -62.2 NC_005261.1 + 90061 0.74 0.226001
Target:  5'- gCCagCgGCGCCCCGCGGGCgccGAgGGCa -3'
miRNA:   3'- gGGagGaCGCGGGGCGUCUG---CUgCCG- -5'
23743 3' -62.2 NC_005261.1 + 36612 0.74 0.231315
Target:  5'- gCgCUCCUGCGCCCCGgCGcACaaACGGCg -3'
miRNA:   3'- -GgGAGGACGCGGGGC-GUcUGc-UGCCG- -5'
23743 3' -62.2 NC_005261.1 + 78406 0.74 0.231315
Target:  5'- uUCCUCC-GUGCUCUGUGGGCGAUGGg -3'
miRNA:   3'- -GGGAGGaCGCGGGGCGUCUGCUGCCg -5'
23743 3' -62.2 NC_005261.1 + 88252 0.76 0.169997
Target:  5'- gUCCUCCUuccgcuucaucGCGCCgCGCugccuggacGACGACGGCg -3'
miRNA:   3'- -GGGAGGA-----------CGCGGgGCGu--------CUGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 66073 0.77 0.150559
Target:  5'- cCCCUCCa--GCCCCaGCAGAUGcGCGGCc -3'
miRNA:   3'- -GGGAGGacgCGGGG-CGUCUGC-UGCCG- -5'
23743 3' -62.2 NC_005261.1 + 50770 0.77 0.146922
Target:  5'- aCCCUCa-GCGCacaCCGCGG-CGGCGGCc -3'
miRNA:   3'- -GGGAGgaCGCGg--GGCGUCuGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 10094 0.81 0.080621
Target:  5'- aCCC-CCgccGCGCCCCgGCAG-CGGCGGCg -3'
miRNA:   3'- -GGGaGGa--CGCGGGG-CGUCuGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 104984 0.8 0.09626
Target:  5'- cCCCgccCCgGCGCCCagCGCGGGCGGCGGUc -3'
miRNA:   3'- -GGGa--GGaCGCGGG--GCGUCUGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 59768 0.8 0.101231
Target:  5'- gCCUCCaUGUGCUcggCCGCAG-CGACGGCg -3'
miRNA:   3'- gGGAGG-ACGCGG---GGCGUCuGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 121376 0.79 0.117634
Target:  5'- -aCUgCagGCGCCCCGCGG-CGGCGGCg -3'
miRNA:   3'- ggGAgGa-CGCGGGGCGUCuGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 107112 0.79 0.117634
Target:  5'- cCCCagCC-GCGCCaCCGCGccGGCGACGGCg -3'
miRNA:   3'- -GGGa-GGaCGCGG-GGCGU--CUGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 63004 0.79 0.120598
Target:  5'- gCCCUCggcggccGCGCCCgCGCGGGCGcCGGCg -3'
miRNA:   3'- -GGGAGga-----CGCGGG-GCGUCUGCuGCCG- -5'
23743 3' -62.2 NC_005261.1 + 111662 0.78 0.129591
Target:  5'- gCCCUCCcGCGCCgCGguGGCGGCguacgucGGCg -3'
miRNA:   3'- -GGGAGGaCGCGGgGCguCUGCUG-------CCG- -5'
23743 3' -62.2 NC_005261.1 + 4819 0.77 0.146922
Target:  5'- uUCCUCC-GCGUUgggCGCAGGCGGCGGCg -3'
miRNA:   3'- -GGGAGGaCGCGGg--GCGUCUGCUGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.