miRNA display CGI


Results 41 - 60 of 345 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23743 3' -62.2 NC_005261.1 + 107112 0.79 0.117634
Target:  5'- cCCCagCC-GCGCCaCCGCGccGGCGACGGCg -3'
miRNA:   3'- -GGGa-GGaCGCGG-GGCGU--CUGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 121376 0.79 0.117634
Target:  5'- -aCUgCagGCGCCCCGCGG-CGGCGGCg -3'
miRNA:   3'- ggGAgGa-CGCGGGGCGUCuGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 59768 0.8 0.101231
Target:  5'- gCCUCCaUGUGCUcggCCGCAG-CGACGGCg -3'
miRNA:   3'- gGGAGG-ACGCGG---GGCGUCuGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 104984 0.8 0.09626
Target:  5'- cCCCgccCCgGCGCCCagCGCGGGCGGCGGUc -3'
miRNA:   3'- -GGGa--GGaCGCGGG--GCGUCUGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 10094 0.81 0.080621
Target:  5'- aCCC-CCgccGCGCCCCgGCAG-CGGCGGCg -3'
miRNA:   3'- -GGGaGGa--CGCGGGG-CGUCuGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 31666 0.75 0.215685
Target:  5'- cCUCUgCCUGCgGCUggCCGCGGcGCGGCGGCg -3'
miRNA:   3'- -GGGA-GGACG-CGG--GGCGUC-UGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 76215 0.75 0.215685
Target:  5'- gCCgcgCCUGCGCCgCGCGcuuGACGagacGCGGCg -3'
miRNA:   3'- gGGa--GGACGCGGgGCGU---CUGC----UGCCG- -5'
23743 3' -62.2 NC_005261.1 + 58555 0.74 0.247888
Target:  5'- -gCUCCUGCGCCgUCGUGGccGCGAgCGGCg -3'
miRNA:   3'- ggGAGGACGCGG-GGCGUC--UGCU-GCCG- -5'
23743 3' -62.2 NC_005261.1 + 98651 0.74 0.247888
Target:  5'- gCCaCUCCUcgGCCCCcCAGGCGAgGGCg -3'
miRNA:   3'- -GG-GAGGAcgCGGGGcGUCUGCUgCCG- -5'
23743 3' -62.2 NC_005261.1 + 103400 0.74 0.242257
Target:  5'- gCCgCCUGCGCCUccagcuccgCGCGGGCcGCGGCc -3'
miRNA:   3'- gGGaGGACGCGGG---------GCGUCUGcUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 33777 0.74 0.242257
Target:  5'- gCCCgcggcgagCgCUGgGCCCCGCgcGGGCGGCGGg -3'
miRNA:   3'- -GGGa-------G-GACgCGGGGCG--UCUGCUGCCg -5'
23743 3' -62.2 NC_005261.1 + 6241 0.74 0.242257
Target:  5'- gCCCggggagggCCUGCccGCCCCGCGG--GGCGGCc -3'
miRNA:   3'- -GGGa-------GGACG--CGGGGCGUCugCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 129930 0.74 0.23893
Target:  5'- gCCCUCCacgGCGCCCaccgagugguacaucUGCAGcAgGGCGGCc -3'
miRNA:   3'- -GGGAGGa--CGCGGG---------------GCGUC-UgCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 4509 0.74 0.231315
Target:  5'- cCCCagUCgcGCGCCCgCGCGGGCGccGCGGCg -3'
miRNA:   3'- -GGGa-GGa-CGCGGG-GCGUCUGC--UGCCG- -5'
23743 3' -62.2 NC_005261.1 + 106516 0.74 0.231315
Target:  5'- gCCCUCCagcaGCGCCagcaCCGCcuccucGGCGGCGGCc -3'
miRNA:   3'- -GGGAGGa---CGCGG----GGCGu-----CUGCUGCCG- -5'
23743 3' -62.2 NC_005261.1 + 132146 0.74 0.231315
Target:  5'- gCCCUCCUccucgagcGCGCCgCCGCugcaggcagcgcGGGCGGgGGCc -3'
miRNA:   3'- -GGGAGGA--------CGCGG-GGCG------------UCUGCUgCCG- -5'
23743 3' -62.2 NC_005261.1 + 78406 0.74 0.231315
Target:  5'- uUCCUCC-GUGCUCUGUGGGCGAUGGg -3'
miRNA:   3'- -GGGAGGaCGCGGGGCGUCUGCUGCCg -5'
23743 3' -62.2 NC_005261.1 + 36612 0.74 0.231315
Target:  5'- gCgCUCCUGCGCCCCGgCGcACaaACGGCg -3'
miRNA:   3'- -GgGAGGACGCGGGGC-GUcUGc-UGCCG- -5'
23743 3' -62.2 NC_005261.1 + 90061 0.74 0.226001
Target:  5'- gCCagCgGCGCCCCGCGGGCgccGAgGGCa -3'
miRNA:   3'- gGGagGaCGCGGGGCGUCUG---CUgCCG- -5'
23743 3' -62.2 NC_005261.1 + 55273 0.75 0.220792
Target:  5'- gCCC-CCUgGCGCgCCGgAGGCGGgGGCg -3'
miRNA:   3'- -GGGaGGA-CGCGgGGCgUCUGCUgCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.