miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23744 3' -53.5 NC_005261.1 + 80652 0.66 0.954369
Target:  5'- cGAGUagcUGGugugcUCGcGGUGCGCGCcgucGCGGa -3'
miRNA:   3'- -CUCA---ACCuuu--AGU-CCACGCGCG----CGUC- -5'
23744 3' -53.5 NC_005261.1 + 12926 0.68 0.887661
Target:  5'- gGGGUUGaGGAugucgUAGGUGCGCuucuggcccGCGCGGc -3'
miRNA:   3'- -CUCAAC-CUUua---GUCCACGCG---------CGCGUC- -5'
23744 3' -53.5 NC_005261.1 + 57186 0.68 0.887661
Target:  5'- gGGGUcggcgGGAAGggGGGgggGgGCGCGCGGg -3'
miRNA:   3'- -CUCAa----CCUUUagUCCa--CgCGCGCGUC- -5'
23744 3' -53.5 NC_005261.1 + 48329 0.68 0.887661
Target:  5'- ----cGGGc-UCGGGgGCGCGCGCGGc -3'
miRNA:   3'- cucaaCCUuuAGUCCaCGCGCGCGUC- -5'
23744 3' -53.5 NC_005261.1 + 98255 0.68 0.901299
Target:  5'- cGGUgcGGcgcGUCAGGcgGCGCGCGCGu -3'
miRNA:   3'- cUCAa-CCuu-UAGUCCa-CGCGCGCGUc -5'
23744 3' -53.5 NC_005261.1 + 105358 0.67 0.907746
Target:  5'- uGAGgcaGGccguGA-CAGGcgGCGCGCGCGGg -3'
miRNA:   3'- -CUCaa-CCu---UUaGUCCa-CGCGCGCGUC- -5'
23744 3' -53.5 NC_005261.1 + 67107 0.67 0.907746
Target:  5'- ----cGGug--CGGGcgGCGCGCGCAGu -3'
miRNA:   3'- cucaaCCuuuaGUCCa-CGCGCGCGUC- -5'
23744 3' -53.5 NC_005261.1 + 112847 0.67 0.913943
Target:  5'- ----cGGAGAUC--GUGCaGCGCGCGGa -3'
miRNA:   3'- cucaaCCUUUAGucCACG-CGCGCGUC- -5'
23744 3' -53.5 NC_005261.1 + 13290 0.67 0.919885
Target:  5'- -uGgcGGGGcgCAGGUGUGCGaCGgGGg -3'
miRNA:   3'- cuCaaCCUUuaGUCCACGCGC-GCgUC- -5'
23744 3' -53.5 NC_005261.1 + 49211 0.68 0.880479
Target:  5'- cGAGggcgGGAGGcCGGcGcccaGCGCGCGCAGg -3'
miRNA:   3'- -CUCaa--CCUUUaGUC-Ca---CGCGCGCGUC- -5'
23744 3' -53.5 NC_005261.1 + 138174 0.68 0.873061
Target:  5'- gGGGgagGGAGAggGGGggaggGCGCGgGCGGg -3'
miRNA:   3'- -CUCaa-CCUUUagUCCa----CGCGCgCGUC- -5'
23744 3' -53.5 NC_005261.1 + 503 0.68 0.873061
Target:  5'- gGGGgagGGAGAggGGGggaggGCGCGgGCGGg -3'
miRNA:   3'- -CUCaa-CCUUUagUCCa----CGCGCgCGUC- -5'
23744 3' -53.5 NC_005261.1 + 11384 0.71 0.718028
Target:  5'- gGAGggaGGGAGUguGG-GCGgGCGCGGg -3'
miRNA:   3'- -CUCaa-CCUUUAguCCaCGCgCGCGUC- -5'
23744 3' -53.5 NC_005261.1 + 20439 0.71 0.75835
Target:  5'- cGGGggGGAGcgCAGacGUGCcCGCGCGGg -3'
miRNA:   3'- -CUCaaCCUUuaGUC--CACGcGCGCGUC- -5'
23744 3' -53.5 NC_005261.1 + 110531 0.71 0.768158
Target:  5'- ----cGGGGcgCAGGaggGCGCGCGCAc -3'
miRNA:   3'- cucaaCCUUuaGUCCa--CGCGCGCGUc -5'
23744 3' -53.5 NC_005261.1 + 125285 0.7 0.796766
Target:  5'- ---cUGGAAGUCAGGccGCGgGCGcCGGa -3'
miRNA:   3'- cucaACCUUUAGUCCa-CGCgCGC-GUC- -5'
23744 3' -53.5 NC_005261.1 + 134901 0.7 0.815059
Target:  5'- cGGUggUGGAg--CGGGUGCGCaaGCGCAa -3'
miRNA:   3'- cUCA--ACCUuuaGUCCACGCG--CGCGUc -5'
23744 3' -53.5 NC_005261.1 + 34913 0.7 0.815059
Target:  5'- ----cGGAGGUCGGG-GCGCGgccaCGCGGg -3'
miRNA:   3'- cucaaCCUUUAGUCCaCGCGC----GCGUC- -5'
23744 3' -53.5 NC_005261.1 + 122321 0.7 0.815059
Target:  5'- cGGGccGGcgGUCAGGUgGCGCuCGCAGa -3'
miRNA:   3'- -CUCaaCCuuUAGUCCA-CGCGcGCGUC- -5'
23744 3' -53.5 NC_005261.1 + 5725 0.68 0.865413
Target:  5'- ----cGGAGAggccggCGGGagaaGCGCGCGCGGa -3'
miRNA:   3'- cucaaCCUUUa-----GUCCa---CGCGCGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.