miRNA display CGI


Results 41 - 60 of 310 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23744 5' -60.3 NC_005261.1 + 60930 0.66 0.714369
Target:  5'- cGGCGGCgacccGCGG--GCCGUgGCcCGaGCGGc -3'
miRNA:   3'- -CCGCCG-----CGCCaaCGGCA-UGaGC-CGCC- -5'
23744 5' -60.3 NC_005261.1 + 70887 0.66 0.761258
Target:  5'- cGGCGGUGCacaugGCCGUgcACUUGcGCGc -3'
miRNA:   3'- -CCGCCGCGccaa-CGGCA--UGAGC-CGCc -5'
23744 5' -60.3 NC_005261.1 + 117914 0.66 0.752059
Target:  5'- cGGCuGCGCGGgaacgaagGCCG-GCUgCGGCc- -3'
miRNA:   3'- -CCGcCGCGCCaa------CGGCaUGA-GCCGcc -5'
23744 5' -60.3 NC_005261.1 + 1294 0.66 0.714369
Target:  5'- cGGCGGgGCucccGUcGCCGg---CGGCGGc -3'
miRNA:   3'- -CCGCCgCGc---CAaCGGCaugaGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 2687 0.66 0.733377
Target:  5'- cGGCGGCGCGccgGCUuuugGC-CGGCGc -3'
miRNA:   3'- -CCGCCGCGCcaaCGGca--UGaGCCGCc -5'
23744 5' -60.3 NC_005261.1 + 35012 0.66 0.752059
Target:  5'- uGCGGUGCGGccGgCGU-CUCGGUc- -3'
miRNA:   3'- cCGCCGCGCCaaCgGCAuGAGCCGcc -5'
23744 5' -60.3 NC_005261.1 + 118399 0.66 0.752059
Target:  5'- uGGCGGcCGCGGgcGCCGcaGC-CGcGCuGGc -3'
miRNA:   3'- -CCGCC-GCGCCaaCGGCa-UGaGC-CG-CC- -5'
23744 5' -60.3 NC_005261.1 + 81200 0.66 0.733377
Target:  5'- cGGCcGCGCGGgcgcgaGCCGgaccaccgugGCgcccgagggCGGCGGg -3'
miRNA:   3'- -CCGcCGCGCCaa----CGGCa---------UGa--------GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 127794 0.66 0.761258
Target:  5'- aGCGGCGggcCGGc-GCCGcgg-CGGCGGg -3'
miRNA:   3'- cCGCCGC---GCCaaCGGCaugaGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 10902 0.66 0.752059
Target:  5'- cGGCGGCgGCGGcagcGCCGccGC-CGGCc- -3'
miRNA:   3'- -CCGCCG-CGCCaa--CGGCa-UGaGCCGcc -5'
23744 5' -60.3 NC_005261.1 + 49168 0.66 0.770351
Target:  5'- aGGCGGCcacgGCGGg----GUGCUCGGCc- -3'
miRNA:   3'- -CCGCCG----CGCCaacggCAUGAGCCGcc -5'
23744 5' -60.3 NC_005261.1 + 28879 0.66 0.770351
Target:  5'- uGCGGCGCGGacGCCGccgccUGCgcccaacGCGGa -3'
miRNA:   3'- cCGCCGCGCCaaCGGC-----AUGagc----CGCC- -5'
23744 5' -60.3 NC_005261.1 + 58986 0.66 0.769446
Target:  5'- aGGCcuccacgGGCgGCGGUgcGCCGgGCUCGcccaGCGGc -3'
miRNA:   3'- -CCG-------CCG-CGCCAa-CGGCaUGAGC----CGCC- -5'
23744 5' -60.3 NC_005261.1 + 46992 0.66 0.761258
Target:  5'- cGGCaGCGCGcGccgcGCCGccGCgaugCGGCGGu -3'
miRNA:   3'- -CCGcCGCGC-Caa--CGGCa-UGa---GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 52460 0.66 0.733377
Target:  5'- cGGCGcGCGUcaGGaUGCgGUug-CGGCGGc -3'
miRNA:   3'- -CCGC-CGCG--CCaACGgCAugaGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 5122 0.66 0.711494
Target:  5'- -uCGGCGCGGgcggcccGCCGgcGCUCgcgcgccucggcccGGCGGg -3'
miRNA:   3'- ccGCCGCGCCaa-----CGGCa-UGAG--------------CCGCC- -5'
23744 5' -60.3 NC_005261.1 + 40239 0.66 0.733377
Target:  5'- -cUGGCcCGGggGCCGUgaGCgccauggCGGCGGc -3'
miRNA:   3'- ccGCCGcGCCaaCGGCA--UGa------GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 34925 0.66 0.714369
Target:  5'- cGCGGCcacGCGGggggcgGCCGgcgcgacccggGCcCGGCGGc -3'
miRNA:   3'- cCGCCG---CGCCaa----CGGCa----------UGaGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 90208 0.66 0.742762
Target:  5'- cGGgGGCgGCGGagcGCCcucGCgCGGCGGg -3'
miRNA:   3'- -CCgCCG-CGCCaa-CGGca-UGaGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 23016 0.66 0.752059
Target:  5'- aGGCGGCccGCGaacgccuUUGCCGggaggGgaCGGCGGc -3'
miRNA:   3'- -CCGCCG--CGCc------AACGGCa----UgaGCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.