miRNA display CGI


Results 61 - 80 of 310 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23744 5' -60.3 NC_005261.1 + 52460 0.66 0.733377
Target:  5'- cGGCGcGCGUcaGGaUGCgGUug-CGGCGGc -3'
miRNA:   3'- -CCGC-CGCG--CCaACGgCAugaGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 81200 0.66 0.733377
Target:  5'- cGGCcGCGCGGgcgcgaGCCGgaccaccgugGCgcccgagggCGGCGGg -3'
miRNA:   3'- -CCGcCGCGCCaa----CGGCa---------UGa--------GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 28635 0.66 0.723909
Target:  5'- uGGUGGcCGCGGggGagagugaCGagGC-CGGCGGg -3'
miRNA:   3'- -CCGCC-GCGCCaaCg------GCa-UGaGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 60930 0.66 0.714369
Target:  5'- cGGCGGCgacccGCGG--GCCGUgGCcCGaGCGGc -3'
miRNA:   3'- -CCGCCG-----CGCCaaCGGCA-UGaGC-CGCC- -5'
23744 5' -60.3 NC_005261.1 + 132063 0.66 0.751133
Target:  5'- uGGCGGCcgaggucGCGGccGCCGUcgccGCUgCcGCGGa -3'
miRNA:   3'- -CCGCCG-------CGCCaaCGGCA----UGA-GcCGCC- -5'
23744 5' -60.3 NC_005261.1 + 118399 0.66 0.752059
Target:  5'- uGGCGGcCGCGGgcGCCGcaGC-CGcGCuGGc -3'
miRNA:   3'- -CCGCC-GCGCCaaCGGCa-UGaGC-CG-CC- -5'
23744 5' -60.3 NC_005261.1 + 84305 0.66 0.761258
Target:  5'- cGGCGGCGCcgaaggcguaGGUcgcguccgggGCCGcGCUCGcGCa- -3'
miRNA:   3'- -CCGCCGCG----------CCAa---------CGGCaUGAGC-CGcc -5'
23744 5' -60.3 NC_005261.1 + 132900 0.67 0.665858
Target:  5'- gGGCGcCGCGGgcggcGCCGag--CGGCGGc -3'
miRNA:   3'- -CCGCcGCGCCaa---CGGCaugaGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 31603 0.67 0.704764
Target:  5'- cGGC-GCGCaGGgcgUGCUGcUGCUCGcgacGCGGg -3'
miRNA:   3'- -CCGcCGCG-CCa--ACGGC-AUGAGC----CGCC- -5'
23744 5' -60.3 NC_005261.1 + 39341 0.67 0.703801
Target:  5'- cGCGGCcaagcugcgcgcgGCGGcaGCCGccucaUCGGCGGc -3'
miRNA:   3'- cCGCCG-------------CGCCaaCGGCaug--AGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 38939 0.67 0.665858
Target:  5'- cGGCGGC-CGGgcggGCCGcgg-CGcGCGGg -3'
miRNA:   3'- -CCGCCGcGCCaa--CGGCaugaGC-CGCC- -5'
23744 5' -60.3 NC_005261.1 + 136904 0.67 0.656049
Target:  5'- -cUGGCGUGGUguggGCCGcGCggccgCGGCGc -3'
miRNA:   3'- ccGCCGCGCCAa---CGGCaUGa----GCCGCc -5'
23744 5' -60.3 NC_005261.1 + 107694 0.67 0.695103
Target:  5'- cGCGGCGgGGgcGCCGccgaacgucgcUGCcgCGGCaGGc -3'
miRNA:   3'- cCGCCGCgCCaaCGGC-----------AUGa-GCCG-CC- -5'
23744 5' -60.3 NC_005261.1 + 123692 0.67 0.704764
Target:  5'- cGGCGcucaGCGUGG--GCCGcgUACUCGGCc- -3'
miRNA:   3'- -CCGC----CGCGCCaaCGGC--AUGAGCCGcc -5'
23744 5' -60.3 NC_005261.1 + 90748 0.67 0.700906
Target:  5'- aGGCgcuGGCGCGGgacuuccccgagGCCGccgaggccGCUgCGGCGGc -3'
miRNA:   3'- -CCG---CCGCGCCaa----------CGGCa-------UGA-GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 30790 0.67 0.656049
Target:  5'- cGGCGGUGgaGGUgcugggGCCGgaggaGCUgGGgGGg -3'
miRNA:   3'- -CCGCCGCg-CCAa-----CGGCa----UGAgCCgCC- -5'
23744 5' -60.3 NC_005261.1 + 47452 0.67 0.656049
Target:  5'- aGGCGcccggcccgcuuGCGCGGggGCUGgGCgaugUCGGCGa -3'
miRNA:   3'- -CCGC------------CGCGCCaaCGGCaUG----AGCCGCc -5'
23744 5' -60.3 NC_005261.1 + 98522 0.67 0.653102
Target:  5'- gGGCaGGCGCGaGauccgGCCGguagGCUgcgcccgcgaaaucCGGCGGg -3'
miRNA:   3'- -CCG-CCGCGC-Caa---CGGCa---UGA--------------GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 68090 0.67 0.665858
Target:  5'- cGGgGGCGgGGagGCCGUGaagUUCGGgcUGGa -3'
miRNA:   3'- -CCgCCGCgCCaaCGGCAU---GAGCC--GCC- -5'
23744 5' -60.3 NC_005261.1 + 118858 0.67 0.656049
Target:  5'- gGGCGGCGCGcccgcgGCCcuGgcCUCGGCc- -3'
miRNA:   3'- -CCGCCGCGCcaa---CGG--CauGAGCCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.