miRNA display CGI


Results 81 - 100 of 310 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23744 5' -60.3 NC_005261.1 + 15041 0.67 0.675642
Target:  5'- gGGCGuaGCGGgggggGUCGgggucgCGGCGGg -3'
miRNA:   3'- -CCGCcgCGCCaa---CGGCauga--GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 84270 0.67 0.685393
Target:  5'- cGGCauGGCGCaGG-UGCCGc---CGGCGGc -3'
miRNA:   3'- -CCG--CCGCG-CCaACGGCaugaGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 30790 0.67 0.656049
Target:  5'- cGGCGGUGgaGGUgcugggGCCGgaggaGCUgGGgGGg -3'
miRNA:   3'- -CCGCCGCg-CCAa-----CGGCa----UGAgCCgCC- -5'
23744 5' -60.3 NC_005261.1 + 80063 0.67 0.665858
Target:  5'- cGGCgGGCGCGGggGgCGUgggggacgcggAC-CGGCGc -3'
miRNA:   3'- -CCG-CCGCGCCaaCgGCA-----------UGaGCCGCc -5'
23744 5' -60.3 NC_005261.1 + 98522 0.67 0.653102
Target:  5'- gGGCaGGCGCGaGauccgGCCGguagGCUgcgcccgcgaaaucCGGCGGg -3'
miRNA:   3'- -CCG-CCGCGC-Caa---CGGCa---UGA--------------GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 134872 0.67 0.685393
Target:  5'- cGCGccccCGCGGgccccUGCUGUGCguUCGGUGGu -3'
miRNA:   3'- cCGCc---GCGCCa----ACGGCAUG--AGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 1804 0.67 0.695103
Target:  5'- cGGCGGCGCcccggGGUagaGCCGcGCguaagcggccUCGGCGc -3'
miRNA:   3'- -CCGCCGCG-----CCAa--CGGCaUG----------AGCCGCc -5'
23744 5' -60.3 NC_005261.1 + 79827 0.67 0.704764
Target:  5'- cGGCGGCGCGGcgGCCa-GCgCaGCGc -3'
miRNA:   3'- -CCGCCGCGCCaaCGGcaUGaGcCGCc -5'
23744 5' -60.3 NC_005261.1 + 123692 0.67 0.704764
Target:  5'- cGGCGcucaGCGUGG--GCCGcgUACUCGGCc- -3'
miRNA:   3'- -CCGC----CGCGCCaaCGGC--AUGAGCCGcc -5'
23744 5' -60.3 NC_005261.1 + 97171 0.67 0.675642
Target:  5'- cGGCugGGuCGCGGgcGCCGgccggGCcgCGGcCGGa -3'
miRNA:   3'- -CCG--CC-GCGCCaaCGGCa----UGa-GCC-GCC- -5'
23744 5' -60.3 NC_005261.1 + 90748 0.67 0.700906
Target:  5'- aGGCgcuGGCGCGGgacuuccccgagGCCGccgaggccGCUgCGGCGGc -3'
miRNA:   3'- -CCG---CCGCGCCaa----------CGGCa-------UGA-GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 107694 0.67 0.695103
Target:  5'- cGCGGCGgGGgcGCCGccgaacgucgcUGCcgCGGCaGGc -3'
miRNA:   3'- cCGCCGCgCCaaCGGC-----------AUGa-GCCG-CC- -5'
23744 5' -60.3 NC_005261.1 + 127367 0.67 0.704764
Target:  5'- cGUGGCuaGGaUGUCGUuggCGGCGGc -3'
miRNA:   3'- cCGCCGcgCCaACGGCAugaGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 15369 0.67 0.685393
Target:  5'- cGGCGGCGCucGgcGCC---CUCGGCGc -3'
miRNA:   3'- -CCGCCGCGc-CaaCGGcauGAGCCGCc -5'
23744 5' -60.3 NC_005261.1 + 59793 0.67 0.675642
Target:  5'- cGGCGGCggGCGGcagGCCG-GCgUGGCGc -3'
miRNA:   3'- -CCGCCG--CGCCaa-CGGCaUGaGCCGCc -5'
23744 5' -60.3 NC_005261.1 + 47452 0.67 0.656049
Target:  5'- aGGCGcccggcccgcuuGCGCGGggGCUGgGCgaugUCGGCGa -3'
miRNA:   3'- -CCGC------------CGCGCCaaCGGCaUG----AGCCGCc -5'
23744 5' -60.3 NC_005261.1 + 38939 0.67 0.665858
Target:  5'- cGGCGGC-CGGgcggGCCGcgg-CGcGCGGg -3'
miRNA:   3'- -CCGCCGcGCCaa--CGGCaugaGC-CGCC- -5'
23744 5' -60.3 NC_005261.1 + 68090 0.67 0.665858
Target:  5'- cGGgGGCGgGGagGCCGUGaagUUCGGgcUGGa -3'
miRNA:   3'- -CCgCCGCgCCaaCGGCAU---GAGCC--GCC- -5'
23744 5' -60.3 NC_005261.1 + 118858 0.67 0.656049
Target:  5'- gGGCGGCGCGcccgcgGCCcuGgcCUCGGCc- -3'
miRNA:   3'- -CCGCCGCGCcaa---CGG--CauGAGCCGcc -5'
23744 5' -60.3 NC_005261.1 + 81506 0.67 0.695103
Target:  5'- cGCGGCGCGcgcGCCGccGC-CGGCGc -3'
miRNA:   3'- cCGCCGCGCcaaCGGCa-UGaGCCGCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.